C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: paired-like homeodomain 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000265340 PITX1-001 ENSG00000069011 9606 - 5:135027735-135034298 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000265340
Transcript ID Adrenal Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000265340 0.297±0.00 0.256±0.00 0.019±0.00 0.110±0.00 1.070±0.00 1.467±0.00 11.019±0.00 6.547±7.11 1.621±0.54 0.697±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007JT CIL_0007JT_0002 UCNEbase 5:134524545-135264654
CIL_0009AP CIL_0009AP_0001 VISTA 5:134719818-135321709
CIL_0005XU CIL_0005XU_0001 CGP 5:134967906-135034813

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000978 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001077 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0001190 IEA RNA polymerase II transcription factor binding transcription factor activity involved in positive regulation of transcription
GO:0001501 TAS skeletal system development
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA:IDA nucleus
GO:0005667 IEA transcription factor complex
GO:0005730 IDA nucleolus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0009653 TAS anatomical structure morphogenesis
GO:0014707 IEA branchiomeric skeletal muscle development
GO:0021983 IEA pituitary gland development
GO:0035116 IEA embryonic hindlimb morphogenesis
GO:0035137 IEA hindlimb morphogenesis
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0048625 IEA myoblast fate commitment
GO:0051216 IEA cartilage development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000021968 Pitx1-001 protein_coding Mus_musculus 0 1498
ENSMUST00000173618 Pitx1-002 protein_coding Mus_musculus 0 538

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