C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: paired-like homeodomain transcription factor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000173618 Pitx1-002 ENSMUSG00000021506 10090 - 13:55828474-55836192 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalLiverMuscleENSMUST00000173618
Transcript ID Adrenal Liver Muscle
ENSMUST00000173618 0.073±0.03 0.182±0.00 0.137±0.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009AP CIL_0009AP_0002 VISTA 13:55516415-56118354
CIL_0007JT CIL_0007JT_0005 UCNEbase 13:55750083-56024842
CIL_0005XU CIL_0005XU_0002 CGP 13:55784568-55836192

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001190 IPI RNA polymerase II transcription factor binding transcription factor activity involved in positive regulation of transcription
GO:0001501 IMP skeletal system development
GO:0003677 IEA DNA binding
GO:0005634 IDA nucleus
GO:0005667 IDA transcription factor complex
GO:0005737 IDA cytoplasm
GO:0014707 IMP branchiomeric skeletal muscle development
GO:0021983 IMP pituitary gland development
GO:0035116 IGI embryonic hindlimb morphogenesis
GO:0035137 IMP hindlimb morphogenesis
GO:0045944 IGI positive regulation of transcription from RNA polymerase II promoter
GO:0048625 IMP myoblast fate commitment
GO:0051216 IMP cartilage development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000265340 PITX1-001 protein_coding Homo_sapiens 0 538
ENST00000502676 PITX1-003 protein_coding Homo_sapiens 0 497
ENST00000503586 PITX1-005 protein_coding Homo_sapiens 0 244
ENST00000504936 PITX1-006 retained_intron Homo_sapiens 0 250
ENST00000506438 PITX1-002 protein_coding Homo_sapiens 0 538
ENST00000507253 PITX1-004 protein_coding Homo_sapiens 0 540

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