C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: transmembrane and tetratricopeptide repeat containing 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000266712 TMTC3-001 ENSG00000139324 9606 + 12:88142296-88199887 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000266712
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000266712 2.868±0.00 0.279±0.00 1.226±0.00 1.982±0.85 1.241±0.00 1.356±0.57 0.681±0.49 0.567±0.00 2.473±1.08 1.950±0.50 0.544±0.00 2.366±1.57 1.519±0.44 1.306±0.12

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000212 CIL_000212_0002 CGP 12:88049014-88199887

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0009791 IEA post-embryonic development
GO:0010468 IEA regulation of gene expression
GO:0016021 IEA integral component of membrane
GO:0030154 IEA cell differentiation
GO:0030324 IEA lung development
GO:0048286 IEA lung alveolus development
GO:0048747 IEA muscle fiber development
GO:0060447 IEA bud outgrowth involved in lung branching

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000058154 Tmtc3-001 protein_coding Mus_musculus 0 2885
ENSMUST00000118505 Gm6645-001 processed_pseudogene Mus_musculus 0 2163
ENSMUST00000099318 Tmtc3-002 protein_coding Mus_musculus 0 2135
ENSMUST00000128009 Tmtc3-005 protein_coding Mus_musculus 0 342
ENSMUST00000130883 Tmtc3-003 retained_intron Mus_musculus 0 259

Loading