C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000212_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000062727-ENSDARG00000062846 CGP 7955 25:18421716-18542354
GeneTranscriptPositionBiotype
ENSDARG00000045785 (C25H12orf29)
chromosome 12 open reading frame 29 		ENSDART00000067305 (C25H12orf29-001) 18412714-18421965 protein_coding
ENSDARG00000062727 (cep290)
centrosomal protein 290 		ENSDART00000090921 (cep290-201) 18421977-18489788 protein_coding
ENSDART00000149696 (cep290-001) 18421716-18490227 protein_coding
ENSDARG00000062846 (tmtc3)
transmembrane and tetratricopeptide repeat containing 3 		ENSDART00000091292 (tmtc3-201) 18497602-18542352 protein_coding
ENSDART00000154488 (tmtc3-002) 18512704-18526791 protein_coding
ENSDART00000156000 (tmtc3-001) 18489658-18542354 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_000212_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000198707-ENSG00000139324 CGP 9606 12:88049014-88199887
GeneTranscriptPositionBiotype
ENSG00000133641 (C12orf29)
chromosome 12 open reading frame 29 		ENST00000356891 (C12orf29-001) 88035446-88050160 protein_coding
ENST00000453037 (C12orf29-010) 88035562-88046949 nonsense_mediated_decay
ENST00000547468 (C12orf29-008) 88041708-88048423 retained_intron
ENST00000548511 (C12orf29-002) 88035752-88048457 retained_intron
ENST00000548757 (C12orf29-006) 88033846-88046976 processed_transcript
ENST00000549345 (C12orf29-007) 88034132-88045602 processed_transcript
ENST00000550333 (C12orf29-003) 88035505-88050158 nonsense_mediated_decay
ENST00000552121 (C12orf29-004) 88035536-88049225 nonsense_mediated_decay
ENST00000552803 (C12orf29-009) 88035610-88043838 retained_intron
ENST00000552847 (C12orf29-005) 88035538-88045787 nonsense_mediated_decay
ENSG00000139324 (TMTC3)
transmembrane and tetratricopeptide repeat containing 3 		ENST00000266712 (TMTC3-001) 88142296-88199887 protein_coding
ENST00000547034 (TMTC3-002) 88142296-88188908 nonsense_mediated_decay
ENST00000549011 (TMTC3-004) 88142296-88154324 protein_coding
ENST00000551088 (TMTC3-003) 88142307-88160710 protein_coding
ENSG00000198707 (CEP290)
centrosomal protein 290kDa 		ENST00000309041 (CEP290-201) 88049014-88141307 protein_coding
ENST00000397838 (CEP290-202) 88109132-88141307 protein_coding
ENST00000547691 (CEP290-005) 88049016-88104188 protein_coding
ENST00000547926 (CEP290-004) 88111202-88141033 nonsense_mediated_decay
ENST00000550962 (CEP290-006) 88130391-88142077 protein_coding
ENST00000552770 (CEP290-007) 88135658-88140994 protein_coding
ENST00000552810 (CEP290-001) 88049020-88142216 protein_coding
ENST00000604024 (CEP290-003) 88093597-88129711 protein_coding
ENSG00000257752 (RP11-474L23.3)
 ENST00000549191 (RP11-474L23.3-001) 88057876-88058578 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000212_0001ENSDARG00000045785ENSDART00000067305ENSDARG00000062727ENSDART00000090921ENSDART00000149696ENSDARG00000062846ENSDART00000091292ENSDART00000154488ENSDART00000156000CIL_000212_0002ENSG00000133641ENST00000356891ENST00000453037ENST00000547468ENST00000548511ENST00000548757ENST00000549345ENST00000550333ENST00000552121ENST00000552803ENST00000552847ENSG00000139324ENST00000266712ENST00000547034ENST00000549011ENST00000551088ENSG00000198707ENST00000309041ENST00000397838ENST00000547691ENST00000547926ENST00000550962ENST00000552770ENST00000552810ENST00000604024ENSG00000257752ENST00000549191
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000212_0001ENSDARG00000045785ENSDART00000067305ENSDARG00000062727ENSDART00000090921ENSDART00000149696ENSDARG00000062846ENSDART00000091292ENSDART00000156000CIL_000212_0002ENSG00000133641ENST00000356891ENST00000453037ENST00000550333ENST00000552121ENSG00000139324ENST00000266712ENST00000547034ENSG00000198707ENST00000309041ENST00000547691ENST00000552810ENSG00000257752ENST00000549191
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000045785 ENSDART00000067305 N/A N/A N/A 10.509±0.07 N/A N/A N/A 5.015±0.13 1.189±0.00 N/A N/A N/A N/A N/A
ENSDARG00000062727 ENSDART00000090921 N/A N/A N/A 2.721±0.00 N/A N/A N/A N/A N/A N/A 0.420±0.00 N/A N/A N/A
ENSDART00000149696 N/A N/A N/A N/A N/A N/A 1.899±0.31 2.870±0.00 N/A N/A 0.309±0.00 N/A N/A N/A
ENSDARG00000062846 ENSDART00000091292 N/A N/A N/A 3.624±1.20 N/A N/A 2.887±0.59 3.633±1.31 0.955±0.00 N/A 2.669±0.00 N/A N/A N/A
ENSDART00000154488 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000156000 N/A N/A N/A N/A N/A N/A N/A N/A 0.204±0.00 N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000133641 ENST00000356891 1.150±0.00 N/A N/A 3.451±0.40 1.891±0.00 2.698±0.00 1.399±0.00 1.616±0.00 1.869±0.94 1.105±0.00 1.042±0.00 2.528±0.39 0.821±0.17 3.103±0.00
ENST00000453037 2.773±0.00 N/A N/A N/A N/A N/A 3.514±0.00 N/A 2.405±0.00 6.459±0.00 N/A N/A N/A N/A
ENST00000547468 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000548511 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000548757 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000549345 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000550333 N/A N/A N/A 2.680±0.00 N/A 1.838±0.00 N/A 2.367±0.65 0.657±0.00 1.208±0.00 0.403±0.00 N/A 0.424±0.00 N/A
ENST00000552121 N/A N/A N/A N/A N/A N/A N/A 2.405±0.00 N/A N/A N/A N/A N/A N/A
ENST00000552803 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000552847 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000139324 ENST00000266712 2.868±0.00 0.279±0.00 1.226±0.00 1.982±0.85 1.241±0.00 1.356±0.57 0.681±0.49 0.567±0.00 2.473±1.08 1.950±0.50 0.544±0.00 2.366±1.57 1.519±0.44 1.306±0.12
ENST00000547034 N/A N/A 0.717±0.00 N/A 2.548±0.00 1.558±0.00 N/A N/A N/A 2.237±0.00 N/A N/A N/A N/A
ENST00000549011 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000551088 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000198707 ENST00000309041 0.662±0.00 N/A N/A N/A 0.437±0.00 N/A 0.233±0.00 N/A 0.189±0.00 0.334±0.00 0.213±0.00 0.758±0.00 0.187±0.00 N/A
ENST00000397838 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000547691 N/A N/A 0.585±0.00 0.583±0.00 0.567±0.00 1.000±0.11 N/A N/A 0.744±0.00 0.632±0.00 0.109±0.00 0.757±0.07 0.226±0.02 1.104±0.00
ENST00000547926 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000550962 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000552770 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000552810 N/A 0.634±0.00 0.809±0.00 1.182±0.16 1.234±0.00 N/A 0.631±0.20 N/A 0.767±0.00 N/A N/A 1.028±0.43 1.500±0.00 2.049±1.16
ENST00000604024 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000257752 ENST00000549191 N/A 0.036±0.00 N/A 0.226±0.00 1.697±0.00 0.081±0.00 0.032±0.00 N/A 0.296±0.27 0.878±0.00 N/A 0.110±0.03 N/A 6.128±4.74

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