C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: GATA binding protein 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000269216 GATA6-001 ENSG00000141448 9606 + 18:22169443-22202528 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000269216
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000269216 6.583±0.00 0.076±0.00 0.066±0.00 1.381±0.17 1.649±0.50 8.360±6.86 1.651±0.56 2.846±0.12 4.632±2.46 0.132±0.00 17.313±13.15 4.166±0.75 3.789±1.46

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005NR CIL_0005NR_0001 CGP 18:21704957-22202528
CIL_0008XC CIL_0008XC_0001 VISTA 18:21894022-22494333
CIL_0008XC CIL_0008XC_0002 VISTA 18:21894333-22494345
CIL_0008XC CIL_0008XC_0003 VISTA 18:21894346-22494570

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0000979 IEA RNA polymerase II core promoter sequence-specific DNA binding
GO:0000981 IMP sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0001103 IEA RNA polymerase II repressing transcription factor binding
GO:0001701 IEA in utero embryonic development
GO:0001889 IEA liver development
GO:0003148 IMP outflow tract septum morphogenesis
GO:0003309 IEA type B pancreatic cell differentiation
GO:0003310 IEA pancreatic A cell differentiation
GO:0003677 IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0003700 IDA:IEA sequence-specific DNA binding transcription factor activity
GO:0003705 IEA RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA:IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0005667 IEA transcription factor complex
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006366 IDA transcription from RNA polymerase II promoter
GO:0006644 IEA phospholipid metabolic process
GO:0007493 IEA endodermal cell fate determination
GO:0007596 TAS blood coagulation
GO:0008134 IPI transcription factor binding
GO:0008270 IEA zinc ion binding
GO:0008584 IEP male gonad development
GO:0010468 IEA regulation of gene expression
GO:0014898 IEA cardiac muscle hypertrophy in response to stress
GO:0019901 IPI protein kinase binding
GO:0030855 IEA epithelial cell differentiation
GO:0031016 IEA pancreas development
GO:0032911 IMP negative regulation of transforming growth factor beta1 production
GO:0032912 IMP negative regulation of transforming growth factor beta2 production
GO:0035239 IEA tube morphogenesis
GO:0035987 IEA endodermal cell differentiation
GO:0042493 IMP response to drug
GO:0043066 IMP negative regulation of apoptotic process
GO:0043565 IEA sequence-specific DNA binding
GO:0043627 IEA response to estrogen
GO:0044212 IDA transcription regulatory region DNA binding
GO:0045766 IDA positive regulation of angiogenesis
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0045893 IEA positive regulation of transcription, DNA-templated
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0048645 IEA organ formation
GO:0048738 IEA cardiac muscle tissue development
GO:0051145 IMP smooth muscle cell differentiation
GO:0051891 IEA positive regulation of cardioblast differentiation
GO:0055007 IEA cardiac muscle cell differentiation
GO:0060045 IEA positive regulation of cardiac muscle cell proliferation
GO:0060430 IEA lung saccule development
GO:0060486 IEA Clara cell differentiation
GO:0060510 IEA Type II pneumocyte differentiation
GO:0060575 IDA intestinal epithelial cell differentiation
GO:0060947 IMP cardiac vascular smooth muscle cell differentiation
GO:0070848 IDA response to growth factor
GO:0071158 IDA positive regulation of cell cycle arrest
GO:0071371 IEA cellular response to gonadotropin stimulus
GO:0071456 IDA cellular response to hypoxia
GO:0071773 IEA cellular response to BMP stimulus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000047762 Gata6-201 protein_coding Mus_musculus 0 2820

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