C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005NR_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000101752-ENSG00000141448 CGP 9606 18:21704957-22202528
GeneTranscriptPositionBiotype
ENSG00000101752 (MIB1)
mindbomb E3 ubiquitin protein ligase 1 		ENST00000261537 (MIB1-001) 21741320-21870957 protein_coding
ENST00000577749 (MIB1-003) 21798084-21819558 processed_transcript
ENST00000578260 (MIB1-002) 21803733-21819558 retained_intron
ENST00000578646 (MIB1-004) 21704957-21864974 processed_transcript
ENSG00000141448 (GATA6)
GATA binding protein 6 		ENST00000269216 (GATA6-001) 22169443-22202528 protein_coding
ENST00000581694 (GATA6-002) 22170933-22200880 protein_coding
ENSG00000199977 (SNORA73)
Small nucleolar RNA SNORA73 family 		ENST00000363107 (SNORA73.1-201) 21817624-21817828 snoRNA
ENSG00000200750 (Y_RNA)
Y RNA 		ENST00000363880 (Y_RNA.1-382) 21724119-21724229 misc_RNA
ENSG00000201852 (RNU6-702P)
RNA, U6 small nuclear 702, pseudogene 		ENST00000364982 (RNU6-702P-201) 22180112-22180218 snRNA
ENSG00000221363 (RNU6ATAC20P)
RNA, U6atac small nuclear 20, pseudogene 		ENST00000408436 (RNU6ATAC20P-201) 22130603-22130729 snRNA
ENSG00000242971 (RN7SL233P)
RNA, 7SL, cytoplasmic 233, pseudogene 		ENST00000469988 (RN7SL233P-201) 21793883-21794159 misc_RNA
ENSG00000243303 (RP11-268I9.1)
 ENST00000473394 (RP11-268I9.1-001) 21854640-21854987 processed_pseudogene
ENSG00000252325 (RNU6-1038P)
RNA, U6 small nuclear 1038, pseudogene 		ENST00000516516 (RNU6-1038P-201) 21879801-21879904 snRNA
ENSG00000252677 (SNORA81)
Small nucleolar RNA SNORA81 		ENST00000516868 (SNORA81.1-202) 21711950-21712119 snoRNA
ENSG00000263588 (RP11-595B24.2)
 ENST00000579830 (RP11-595B24.2-001) 22088060-22098780 lincRNA
ENSG00000264012 (RP11-627G18.2)
 ENST00000578504 (RP11-627G18.2-001) 22175465-22176662 antisense
ENSG00000264149 (RP11-268I9.3)
 ENST00000583436 (RP11-268I9.3-001) 21871446-21893996 lincRNA
ENSG00000264183 (AC091038.1)
 ENST00000582102 (AC091038.1-201) 21776878-21776977 miRNA
ENSG00000264289 (RP11-268I9.4)
 ENST00000582071 (RP11-268I9.4-001) 21914369-21914660 processed_pseudogene
ENSG00000265142 (MIR133A1HG)
MIR133A1 host gene (non-protein coding) 		ENST00000577659 (MIR133A1HG-002) 21829433-21831398 antisense
ENST00000581072 (MIR133A1HG-001) 21825487-21831406 antisense
ENST00000581613 (MIR133A1HG-003) 21829087-21831410 antisense
ENSG00000265758 (RP11-595B24.1)
 ENST00000584028 (RP11-595B24.1-003) 22026024-22043478 lincRNA
ENST00000584898 (RP11-595B24.1-001) 21981121-22051159 lincRNA
ENST00000585185 (RP11-595B24.1-002) 22010296-22043471 lincRNA
ENSG00000266010 (GATA6-AS1)
GATA6 antisense RNA 1 (head to head) 		ENST00000579431 (GATA6-AS1-003) 22167255-22168418 lincRNA
ENST00000583490 (GATA6-AS1-001) 22166898-22168968 lincRNA
ENST00000584201 (GATA6-AS1-004) 22167670-22168370 lincRNA
ENST00000584373 (GATA6-AS1-002) 22166979-22167942 lincRNA
ENSG00000266283 (RP11-627G18.1)
 ENST00000583442 (RP11-627G18.1-001) 22200619-22205229 antisense

Homo sapiens Ensembl (GRCh38)

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CIL_0005NR_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000024294-ENSMUSG00000005836 CGP 10090 18:10725548-11085635
GeneTranscriptPositionBiotype
ENSMUSG00000005836 (Gata6)
GATA binding protein 6 		ENSMUST00000047762 (Gata6-201) 11052510-11085635 protein_coding
ENSMUSG00000024294 (Mib1)
mindbomb homolog 1 (Drosophila) 		ENSMUST00000052838 (Mib1-001) 10725548-10818578 protein_coding
ENSMUST00000124288 (Mib1-004) 10760809-10818704 protein_coding
ENSMUST00000131073 (Mib1-003) 10725744-10755699 retained_intron
ENSMUST00000150000 (Mib1-002) 10798365-10817628 protein_coding
ENSMUST00000165555 (Mib1-201) 10725655-10812174 protein_coding
ENSMUSG00000095438 (Gm21747)
predicted gene, 21747 		ENSMUST00000179771 (Gm21747-001) 10781723-10785883 antisense
ENSMUSG00000097222 (1010001N08Rik)
RIKEN cDNA 1010001N08 gene 		ENSMUST00000180789 (1010001N08Rik-201) 11049087-11051489 lincRNA
ENSMUST00000181316 (1010001N08Rik-202) 11049931-11052567 lincRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005NR_0001ENSG00000101752ENST00000261537ENST00000577749ENST00000578260ENST00000578646ENSG00000141448ENST00000269216ENST00000581694ENSG00000199977ENST00000363107ENSG00000200750ENST00000363880ENSG00000201852ENST00000364982ENSG00000221363ENST00000408436ENSG00000242971ENST00000469988ENSG00000243303ENST00000473394ENSG00000252325ENST00000516516ENSG00000252677ENST00000516868ENSG00000263588ENST00000579830ENSG00000264012ENST00000578504ENSG00000264149ENST00000583436ENSG00000264183ENST00000582102ENSG00000264289ENST00000582071ENSG00000265142ENST00000577659ENST00000581072ENST00000581613ENSG00000265758ENST00000584028ENST00000584898ENST00000585185ENSG00000266010ENST00000579431ENST00000583490ENST00000584201ENST00000584373ENSG00000266283ENST00000583442CIL_0005NR_0002ENSMUSG00000005836ENSMUST00000047762ENSMUSG00000024294ENSMUST00000052838ENSMUST00000124288ENSMUST00000131073ENSMUST00000150000ENSMUST00000165555ENSMUSG00000095438ENSMUST00000179771ENSMUSG00000097222ENSMUST00000180789ENSMUST00000181316
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005NR_0001ENSG00000101752ENST00000261537ENST00000578646ENSG00000141448ENST00000269216ENST00000581694ENSG00000199977ENST00000363107ENSG00000200750ENST00000363880ENSG00000201852ENST00000364982ENSG00000221363ENST00000408436ENSG00000242971ENST00000469988ENSG00000243303ENST00000473394ENSG00000252325ENST00000516516ENSG00000252677ENST00000516868ENSG00000263588ENST00000579830ENSG00000264012ENST00000578504ENSG00000264149ENST00000583436ENSG00000264183ENST00000582102ENSG00000264289ENST00000582071ENSG00000265142ENST00000577659ENST00000581072ENST00000581613ENSG00000265758ENST00000584028ENST00000584898ENST00000585185ENSG00000266010ENST00000579431ENST00000583490ENST00000584201ENST00000584373ENSG00000266283ENST00000583442CIL_0005NR_0002ENSMUSG00000005836ENSMUST00000047762ENSMUSG00000024294ENSMUST00000052838ENSMUST00000124288ENSMUST00000131073ENSMUST00000150000ENSMUST00000165555ENSMUSG00000095438ENSMUST00000179771ENSMUSG00000097222ENSMUST00000180789ENSMUST00000181316
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000101752 ENST00000261537 4.499±0.00 2.357±0.00 3.305±0.00 5.366±0.00 3.522±0.12 2.854±0.52 2.353±0.15 3.660±0.95 4.284±2.66 5.739±1.34 1.539±0.50 3.132±1.42 2.130±1.36 6.286±1.31
ENST00000577749 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000578260 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000578646 N/A N/A 2.775±0.00 4.582±0.00 5.420±0.00 5.451±0.00 2.265±0.00 N/A 6.648±0.00 N/A 0.486±0.00 7.754±0.00 N/A N/A
ENSG00000141448 ENST00000269216 N/A 6.583±0.00 0.076±0.00 0.066±0.00 1.381±0.17 1.649±0.50 8.360±6.86 1.651±0.56 2.846±0.12 4.632±2.46 0.132±0.00 17.313±13.15 4.166±0.75 3.789±1.46
ENST00000581694 N/A N/A 0.180±0.00 N/A N/A N/A N/A N/A N/A N/A 0.353±0.00 N/A N/A N/A
ENSG00000199977 ENST00000363107 0.582±0.00 0.083±0.00 N/A 0.824±0.00 6.112±0.00 N/A 0.156±0.00 N/A 2.494±0.00 N/A N/A 0.360±0.00 N/A 0.696±0.00
ENSG00000200750 ENST00000363880 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.634±0.00 N/A N/A
ENSG00000201852 ENST00000364982 N/A 0.813±0.00 N/A N/A N/A N/A 0.566±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000221363 ENST00000408436 N/A 1.825±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.667±0.00 N/A N/A
ENSG00000242971 ENST00000469988 0.188±0.00 0.335±0.00 N/A 0.728±0.00 0.419±0.00 0.126±0.00 0.062±0.00 0.411±0.00 0.061±0.00 0.466±0.00 N/A 0.441±0.00 0.142±0.00 0.586±0.28
ENSG00000243303 ENST00000473394 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.082±0.00 N/A 0.750±0.33 N/A 0.128±0.00
ENSG00000252325 ENST00000516516 N/A N/A N/A N/A 0.432±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000252677 ENST00000516868 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.147±0.00 N/A N/A N/A N/A
ENSG00000263588 ENST00000579830 N/A 0.102±0.00 N/A N/A N/A 0.158±0.00 0.092±0.00 N/A 0.521±0.00 0.030±0.00 N/A 0.109±0.02 N/A N/A
ENSG00000264012 ENST00000578504 0.093±0.00 N/A N/A N/A N/A N/A N/A 0.096±0.00 0.157±0.00 0.485±0.00 N/A 0.456±0.22 0.166±0.00 0.110±0.07
ENSG00000264149 ENST00000583436 N/A 0.152±0.00 N/A N/A N/A N/A N/A N/A 0.214±0.00 N/A N/A N/A N/A 0.300±0.22
ENSG00000264183 ENST00000582102 0.567±0.00 1.506±0.00 N/A 0.334±0.00 331.422±330.77 N/A 2.071±0.00 2.245±0.00 N/A N/A N/A 102.799±0.00 N/A 0.450±0.17
ENSG00000264289 ENST00000582071 N/A N/A N/A N/A N/A N/A N/A 0.036±0.00 N/A N/A N/A N/A 0.185±0.00 N/A
ENSG00000265142 ENST00000577659 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.043±0.00 N/A
ENST00000581072 N/A N/A N/A N/A N/A 0.013±0.00 2.797±2.04 0.011±0.00 0.625±0.00 1.108±0.00 5.339±0.00 0.068±0.00 0.022±0.01 0.006±0.00
ENST00000581613 N/A N/A N/A 0.215±0.00 N/A N/A N/A N/A N/A 0.127±0.00 20.512±0.00 0.038±0.00 N/A 0.076±0.00
ENSG00000265758 ENST00000584028 N/A N/A N/A N/A N/A N/A N/A N/A 0.125±0.00 N/A N/A N/A N/A 0.110±0.00
ENST00000584898 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.023±0.00
ENST00000585185 0.039±0.00 N/A N/A N/A 0.042±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000266010 ENST00000579431 N/A N/A N/A N/A 0.097±0.00 N/A 2.732±0.00 N/A N/A 1.658±0.00 N/A N/A 0.273±0.05 N/A
ENST00000583490 0.053±0.00 N/A N/A N/A N/A 0.142±0.08 N/A N/A 0.232±0.01 0.176±0.07 N/A 0.968±0.83 0.202±0.07 0.104±0.07
ENST00000584201 N/A N/A N/A N/A 0.121±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.409±0.00
ENST00000584373 N/A N/A N/A N/A 0.143±0.00 N/A 1.794±0.00 N/A 0.374±0.00 0.839±0.00 N/A 3.376±3.25 0.622±0.00 0.497±0.40
ENSG00000266283 ENST00000583442 N/A N/A N/A N/A 1.326±0.00 N/A N/A 2.318±0.00 N/A N/A 0.195±0.00 5.822±0.00 3.605±0.00 2.204±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000005836 ENSMUST00000047762 7.051±2.51 24.366±18.38 16.911±1.03 0.100±0.07 4.016±2.59 15.290±7.72 16.424±2.57 0.849±0.35 2.864±0.71 12.490±2.48 0.115±0.04 20.481±13.95 4.195±2.19 1.696±0.83
ENSMUSG00000024294 ENSMUST00000052838 10.648±3.58 7.839±2.55 2.361±0.68 9.431±1.47 7.248±0.80 7.331±1.21 3.570±0.11 8.380±0.76 5.196±2.19 11.871±0.36 2.480±1.78 15.031±3.84 4.486±1.26 3.209±0.99
ENSMUST00000124288 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.552±0.00
ENSMUST00000131073 N/A 7.099±3.55 N/A N/A N/A 4.576±0.91 N/A N/A N/A N/A N/A 5.599±0.00 N/A 8.681±1.19
ENSMUST00000150000 N/A N/A 6.657±0.43 3.563±0.00 N/A N/A N/A N/A 2.468±0.38 N/A 7.238±0.58 5.741±0.61 3.160±0.01 N/A
ENSMUST00000165555 N/A N/A N/A 15.952±0.00 N/A N/A N/A N/A N/A N/A N/A 14.727±0.00 5.118±2.04 21.642±9.32
ENSMUSG00000095438 ENSMUST00000179771 0.216±0.00 N/A 0.204±0.00 0.032±0.00 0.502±0.29 N/A N/A N/A 0.164±0.09 0.249±0.00 6.090±2.59 N/A N/A 0.167±0.00
ENSMUSG00000097222 ENSMUST00000180789 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.022±0.00 N/A N/A N/A
ENSMUST00000181316 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.547±0.00 N/A

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