C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ras homolog family member B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000272233 RHOB-001 ENSG00000143878 9606 + 2:20447074-20449445 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000272233
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000272233 336.460±0.00 247.900±0.00 16.056±0.00 144.571±102.22 122.966±87.71 119.130±97.82 57.700±30.67 101.671±53.07 120.107±39.31 239.815±191.95 63.127±37.55 150.287±131.00 211.187±72.22 112.212±93.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008PO CIL_0008PO_0001 VISTA 2:20278534-20880046

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000910 IMP cytokinesis
GO:0001525 IEA angiogenesis
GO:0003924 TAS:IEA GTPase activity
GO:0005515 IPI protein binding
GO:0005525 TAS:IEA GTP binding
GO:0005622 IEA intracellular
GO:0005634 ISS nucleus
GO:0005769 IEA early endosome
GO:0005770 IEA late endosome
GO:0005829 TAS cytosol
GO:0005886 IDA plasma membrane
GO:0005925 IDA focal adhesion
GO:0006184 TAS:IEA GTP catabolic process
GO:0006886 IEA intracellular protein transport
GO:0006915 TAS apoptotic process
GO:0006927 ISS transformed cell apoptotic process
GO:0007155 ISS cell adhesion
GO:0007165 IEA signal transduction
GO:0007264 TAS:IEA small GTPase mediated signal transduction
GO:0007266 TAS Rho protein signal transduction
GO:0007411 TAS axon guidance
GO:0007596 TAS blood coagulation
GO:0008333 IDA endosome to lysosome transport
GO:0010008 IDA endosome membrane
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0019003 IEA GDP binding
GO:0030168 TAS platelet activation
GO:0032154 IDA cleavage furrow
GO:0043065 IMP positive regulation of apoptotic process
GO:0045766 ISS positive regulation of angiogenesis
GO:0045786 ISS negative regulation of cell cycle
GO:0051056 TAS regulation of small GTPase mediated signal transduction
GO:0070062 IDA extracellular vesicular exosome
GO:0070301 IDA cellular response to hydrogen peroxide
GO:0071479 IDA cellular response to ionizing radiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000067384 Rhob-201 protein_coding Mus_musculus 0 1495

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