C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ras homolog gene family, member B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000067384 Rhob-201 ENSMUSG00000054364 10090 - 12:8497763-8499985 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000067384
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000067384 204.701±17.34 238.718±40.14 103.389±22.26 76.457±23.87 143.370±64.63 216.577±23.46 83.073±14.18 66.013±6.10 14.080±4.86 196.319±47.90 14.234±2.35 148.284±68.48 67.141±27.58 7.533±4.10

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008PO CIL_0008PO_0002 VISTA 12:8085675-8687404

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000910 ISS cytokinesis
GO:0001525 IEA angiogenesis
GO:0005515 IPI protein binding
GO:0005525 TAS GTP binding
GO:0005634 IDA nucleus
GO:0005769 IDA early endosome
GO:0005770 IDA late endosome
GO:0005829 IEA cytosol
GO:0005886 ISS plasma membrane
GO:0005925 IEA focal adhesion
GO:0006886 IMP intracellular protein transport
GO:0006927 IDA transformed cell apoptotic process
GO:0007155 IDA cell adhesion
GO:0007264 IEA small GTPase mediated signal transduction
GO:0008333 ISS endosome to lysosome transport
GO:0010008 ISS endosome membrane
GO:0016020 IDA membrane
GO:0019003 IDA GDP binding
GO:0030154 IEA cell differentiation
GO:0032154 ISS cleavage furrow
GO:0043065 ISS positive regulation of apoptotic process
GO:0045766 IMP positive regulation of angiogenesis
GO:0045786 IMP negative regulation of cell cycle
GO:0070062 IEA extracellular vesicular exosome
GO:0070301 ISS cellular response to hydrogen peroxide
GO:0071479 ISS cellular response to ionizing radiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000272233 RHOB-001 protein_coding Homo_sapiens 0 1495
ENST00000285735 RHOC-002 protein_coding Homo_sapiens 0 388
ENST00000339083 RHOC-001 protein_coding Homo_sapiens 0 388
ENST00000369632 RHOC-009 protein_coding Homo_sapiens 0 388
ENST00000369633 RHOC-201 protein_coding Homo_sapiens 0 388
ENST00000369636 RHOC-005 protein_coding Homo_sapiens 0 302
ENST00000369637 RHOC-004 protein_coding Homo_sapiens 0 388
ENST00000369638 RHOC-012 protein_coding Homo_sapiens 0 388
ENST00000369642 RHOC-003 protein_coding Homo_sapiens 0 388
ENST00000414971 RHOC-013 protein_coding Homo_sapiens 0 230
ENST00000425265 RHOC-008 protein_coding Homo_sapiens 0 388
ENST00000436685 RHOC-010 protein_coding Homo_sapiens 0 305
ENST00000471038 RP11-426L16.10-001 processed_transcript Homo_sapiens 0 298
ENST00000484054 RHOC-006 protein_coding Homo_sapiens 0 230
ENST00000534717 RHOC-018 protein_coding Homo_sapiens 0 370
ENST00000605933 RP11-426L16.10-003 protein_coding Homo_sapiens 0 261
ENST00000606505 RP11-426L16.10-002 protein_coding Homo_sapiens 0 261
ENST00000606954 RP11-426L16.10-005 nonsense_mediated_decay Homo_sapiens 0 261
ENST00000607158 RP11-426L16.10-004 retained_intron Homo_sapiens 0 261

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