C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: polymerase (RNA) II (DNA directed) polypeptide D
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000272645 POLR2D-001 ENSG00000144231 9606 - 2:127846266-127858157 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000272645
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000272645 3.403±0.00 4.004±0.00 1.917±0.00 2.206±0.70 2.293±1.22 2.639±0.55 2.021±1.12 2.376±1.05 4.044±0.00 2.287±0.41 5.708±3.01 7.064±3.40 5.266±0.19 5.099±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000288 IBA nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000398 TAS mRNA splicing, via spliceosome
GO:0000932 IBA cytoplasmic mRNA processing body
GO:0003697 IBA single-stranded DNA binding
GO:0003727 IBA single-stranded RNA binding
GO:0003824 IEA catalytic activity
GO:0003899 IEA:IMP DNA-directed RNA polymerase activity
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005665 IDA DNA-directed RNA polymerase II, core complex
GO:0006281 TAS DNA repair
GO:0006283 TAS transcription-coupled nucleotide-excision repair
GO:0006289 TAS nucleotide-excision repair
GO:0006351 IEA transcription, DNA-templated
GO:0006366 IMP transcription from RNA polymerase II promoter
GO:0006367 IBA transcription initiation from RNA polymerase II promoter
GO:0006368 TAS transcription elongation from RNA polymerase II promoter
GO:0006370 TAS 7-methylguanosine mRNA capping
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0016032 TAS viral process
GO:0031369 IBA translation initiation factor binding
GO:0031990 IBA mRNA export from nucleus in response to heat stress
GO:0034402 IBA recruitment of 3'-end processing factors to RNA polymerase II holoenzyme complex
GO:0044237 IEA cellular metabolic process
GO:0045948 IBA positive regulation of translational initiation
GO:0050434 TAS positive regulation of viral transcription

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000025106 Polr2d-201 protein_coding Mus_musculus 0 505

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