C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: polymerase (RNA) II (DNA directed) polypeptide D
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000025106 Polr2d-201 ENSMUSG00000024258 10090 + 18:31789159-31796642 protein_coding

Mus musculus EnsemblGRCm38

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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000025106
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000025106 25.281±1.63 9.866±0.67 21.781±6.40 32.267±18.40 14.966±5.16 8.583±0.38 15.787±0.54 14.084±2.63 16.172±13.40 14.768±2.16 6.006±0.93 20.799±3.01 20.269±6.84 9.473±3.64

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000288 IBA nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000932 IBA cytoplasmic mRNA processing body
GO:0003697 IBA single-stranded DNA binding
GO:0003727 IBA single-stranded RNA binding
GO:0003899 ISS DNA-directed RNA polymerase activity
GO:0005634 ISS nucleus
GO:0005665 ISS DNA-directed RNA polymerase II, core complex
GO:0006366 ISS transcription from RNA polymerase II promoter
GO:0006367 IBA transcription initiation from RNA polymerase II promoter
GO:0031369 IBA translation initiation factor binding
GO:0031990 IBA mRNA export from nucleus in response to heat stress
GO:0034402 IBA recruitment of 3'-end processing factors to RNA polymerase II holoenzyme complex
GO:0045948 IBA positive regulation of translational initiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000108718 polr2d-001 protein_coding Danio_rerio 0 388
ENST00000272645 POLR2D-001 protein_coding Homo_sapiens 0 505
ENST00000321945 FAM175A-001 protein_coding Homo_sapiens 0.0000005 62
ENST00000409401 DIS3L2-003 protein_coding Homo_sapiens 0.000000001 69
ENST00000409698 POLR2D-003 protein_coding Homo_sapiens 0 416
ENST00000409955 POLR2D-002 protein_coding Homo_sapiens 0 289
ENST00000481451 PLEKHA1-006 retained_intron Homo_sapiens 0.000003 60
ENST00000484949 BCL2L14-008 processed_transcript Homo_sapiens 0.0000005 60
ENST00000487079 POLR2D-004 processed_transcript Homo_sapiens 1e-21 108

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