C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: platelet derived growth factor C
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000274071 PDGFC-002 ENSG00000145431 9606 - 4:156761614-156971315 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000274071
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000274071 3.315±0.00 3.292±0.00 2.739±0.00 1.318±0.06 5.351±1.10 1.248±0.00 2.113±1.35 2.713±0.26 2.371±1.04 1.667±0.72 2.230±0.00 4.732±2.67 3.887±0.93 2.233±1.45

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006DW CIL_0006DW_0002 CGP 4:156760454-157172090

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000129285 Pdgfc-002 nonsense_mediated_decay Mus_musculus 0 1469
ENSMUST00000143721 Pdgfc-003 nonsense_mediated_decay Mus_musculus 0 1020
ENSMUST00000029652 Pdgfc-001 protein_coding Mus_musculus 0 907

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