C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: signal peptide, CUB domain, EGF-like 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000274938 SCUBE3-001 ENSG00000146197 9606 + 6:35214419-35253079 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000274938
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000274938 0.388±0.00 0.426±0.00 0.493±0.00 0.200±0.01 0.307±0.13 0.533±0.36 2.066±0.00 1.245±0.00 0.319±0.30 0.886±0.00 0.212±0.00 0.486±0.13 1.160±0.88 1.627±0.49

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002ET CIL_0002ET_0001 CGP 6:35118071-35253079
CIL_0008UQ CIL_0008UQ_0001 VISTA 6:35189352-35792826
CIL_0002ES CIL_0002ES_0001 CGP 6:35214419-35295985

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005515 IPI:IEA protein binding
GO:0005576 IEA extracellular region
GO:0009986 IDA cell surface
GO:0051260 IDA protein homooligomerization
GO:0051291 IPI protein heterooligomerization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000043503 Scube3-001 protein_coding Mus_musculus 0 3912
ENSMUST00000148342 Scube3-003 processed_transcript Mus_musculus 0 2931
ENSMUST00000137147 Scube3-002 processed_transcript Mus_musculus 0 2931
ENSMUST00000132670 Scube3-004 protein_coding Mus_musculus 0 2087
ENSMUST00000120164 Gm12014-001 processed_pseudogene Mus_musculus 0 926
ENSMUST00000142170 Scube3-005 retained_intron Mus_musculus 0 880

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