C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ATPase, H+ transporting, lysosomal 56/58kDa, V1 subunit B2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000276390 ATP6V1B2-001 ENSG00000147416 9606 + 8:20197367-20221701 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000276390
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000276390 28.371±0.00 21.114±0.00 6.199±0.00 85.923±24.93 12.932±6.88 14.812±9.13 8.522±6.13 18.702±13.91 7.899±3.69 26.058±15.02 13.029±8.38 14.307±7.41 29.759±4.90 46.368±2.58

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003TP CIL_0003TP_0001 CGP 8:20144855-20226819
CIL_0004EF CIL_0004EF_0001 CGP 8:20197367-20303963

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001726 IEA ruffle
GO:0005524 IEA ATP binding
GO:0005737 IEA cytoplasm
GO:0005765 IDA lysosomal membrane
GO:0005829 ISS cytosol
GO:0005886 ISS plasma membrane
GO:0005902 IEA microvillus
GO:0006879 TAS cellular iron ion homeostasis
GO:0008286 TAS insulin receptor signaling pathway
GO:0015078 TAS hydrogen ion transmembrane transporter activity
GO:0015991 IEA ATP hydrolysis coupled proton transport
GO:0015992 TAS:IEA proton transport
GO:0016021 IEA integral component of membrane
GO:0016820 IEA hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances
GO:0033178 IEA proton-transporting two-sector ATPase complex, catalytic domain
GO:0033180 IEA proton-transporting V-type ATPase, V1 domain
GO:0033572 TAS transferrin transport
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0046034 IEA ATP metabolic process
GO:0046961 TAS proton-transporting ATPase activity, rotational mechanism
GO:0051701 TAS interaction with host
GO:0055085 TAS transmembrane transport
GO:0070062 IDA extracellular vesicular exosome
GO:0090382 TAS phagosome maturation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000006435 Atp6v1b2-001 protein_coding Mus_musculus 0 2204
ENSMUST00000153079 Atp6v1b2-003 retained_intron Mus_musculus 0 1386
ENSMUST00000129797 Atp6v1b2-006 retained_intron Mus_musculus 0 630
ENSMUST00000123290 Atp6v1b2-007 retained_intron Mus_musculus 6e-39 167

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