C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003TP_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000036565-ENSG00000147416 CGP 9606 8:20144855-20226819
GeneTranscriptPositionBiotype
ENSG00000036565 (SLC18A1)
solute carrier family 18 (vesicular monoamine transporter), member 1 		ENST00000265808 (SLC18A1-002) 20144855-20183115 protein_coding
ENST00000276373 (SLC18A1-001) 20144855-20183206 protein_coding
ENST00000381608 (SLC18A1-008) 20145788-20180964 protein_coding
ENST00000437980 (SLC18A1-201) 20144856-20183206 protein_coding
ENST00000440926 (SLC18A1-202) 20144856-20183206 protein_coding
ENST00000517776 (SLC18A1-004) 20144859-20183125 nonsense_mediated_decay
ENST00000519026 (SLC18A1-003) 20145498-20183172 protein_coding
ENST00000519171 (SLC18A1-007) 20147603-20150996 retained_intron
ENST00000522513 (SLC18A1-005) 20171103-20183117 protein_coding
ENST00000524272 (SLC18A1-006) 20171105-20175922 processed_transcript
ENSG00000147416 (ATP6V1B2)
ATPase, H+ transporting, lysosomal 56/58kDa, V1 subunit B2 		ENST00000276390 (ATP6V1B2-001) 20197367-20221701 protein_coding
ENST00000519667 (ATP6V1B2-005) 20197439-20211415 protein_coding
ENST00000520830 (ATP6V1B2-004) 20197424-20211254 nonsense_mediated_decay
ENST00000521442 (ATP6V1B2-007) 20218182-20226819 nonsense_mediated_decay
ENST00000523478 (ATP6V1B2-006) 20197404-20211290 nonsense_mediated_decay
ENST00000523482 (ATP6V1B2-003) 20197403-20221689 retained_intron
CIL_0003TP_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000036330-ENSMUSG00000006273 CGP 10090 8:69037711-69113711
GeneTranscriptPositionBiotype
ENSMUSG00000006273 (Atp6v1b2)
ATPase, H+ transporting, lysosomal V1 subunit B2 		ENSMUST00000006435 (Atp6v1b2-001) 69088646-69113711 protein_coding
ENSMUST00000123290 (Atp6v1b2-007) 69102213-69103063 retained_intron
ENSMUST00000125211 (Atp6v1b2-005) 69088789-69096586 retained_intron
ENSMUST00000129797 (Atp6v1b2-006) 69103128-69108340 retained_intron
ENSMUST00000153079 (Atp6v1b2-003) 69088768-69107363 retained_intron
ENSMUST00000153680 (Atp6v1b2-004) 69088787-69102249 retained_intron
ENSMUSG00000036330 (Slc18a1)
solute carrier family 18 (vesicular monoamine), member 1 		ENSMUST00000037478 (Slc18a1-001) 69037711-69089222 protein_coding
ENSMUST00000142548 (Slc18a1-002) 69065110-69077228 retained_intron
ENSMUST00000142710 (Slc18a1-005) 69075169-69089209 processed_transcript
ENSMUST00000147674 (Slc18a1-003) 69070255-69075508 retained_intron
ENSMUST00000148856 (Slc18a1-004) 69075101-69089235 processed_transcript
ENSMUSG00000089995 (Gm15716)
predicted gene 15716 		ENSMUST00000162457 (Gm15716-001) 69044956-69063422 antisense
ENSMUSG00000090108 (Gm15717)
predicted gene 15717 		ENSMUST00000161007 (Gm15717-001) 69110471-69111244 antisense

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003TP_0001ENSG00000036565ENST00000265808ENST00000276373ENST00000381608ENST00000437980ENST00000440926ENST00000517776ENST00000519026ENST00000519171ENST00000522513ENST00000524272ENSG00000147416ENST00000276390ENST00000519667ENST00000520830ENST00000521442ENST00000523478ENST00000523482CIL_0003TP_0002ENSMUSG00000006273ENSMUST00000006435ENSMUST00000123290ENSMUST00000125211ENSMUST00000129797ENSMUST00000153079ENSMUST00000153680ENSMUSG00000036330ENSMUST00000037478ENSMUST00000142548ENSMUST00000142710ENSMUST00000147674ENSMUST00000148856ENSMUSG00000089995ENSMUST00000162457ENSMUSG00000090108ENSMUST00000161007
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003TP_0001ENSG00000036565ENST00000265808ENST00000276373ENST00000381608ENST00000519026ENST00000519171ENST00000522513ENST00000524272ENSG00000147416ENST00000276390ENST00000523482CIL_0003TP_0002ENSMUSG00000006273ENSMUST00000006435ENSMUST00000129797ENSMUST00000153680ENSMUSG00000036330ENSMUST00000037478ENSMUST00000142548ENSMUST00000142710ENSMUST00000147674ENSMUST00000148856ENSMUSG00000089995ENSMUST00000162457ENSMUSG00000090108ENSMUST00000161007
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000036565 ENST00000265808 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.104±0.00
ENST00000276373 N/A N/A N/A N/A N/A 0.054±0.00 N/A N/A N/A 0.062±0.00 N/A 0.019±0.00 N/A N/A
ENST00000381608 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.045±0.00
ENST00000437980 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000440926 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000517776 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000519026 N/A N/A N/A N/A N/A 0.073±0.00 N/A N/A N/A N/A N/A N/A 0.031±0.00 0.067±0.00
ENST00000519171 N/A N/A N/A N/A 0.418±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522513 N/A N/A N/A N/A N/A 0.425±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000524272 0.028±0.00 0.192±0.00 N/A 0.252±0.01 0.067±0.00 N/A 0.013±0.00 0.173±0.09 0.060±0.00 0.023±0.00 N/A N/A N/A N/A
ENSG00000147416 ENST00000276390 28.371±0.00 21.114±0.00 6.199±0.00 85.923±24.93 12.932±6.88 14.812±9.13 8.522±6.13 18.702±13.91 7.899±3.69 26.058±15.02 13.029±8.38 14.307±7.41 29.759±4.90 46.368±2.58
ENST00000519667 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000520830 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000521442 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000523478 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000523482 N/A N/A N/A N/A N/A N/A 0.298±0.00 0.691±0.00 N/A 1.121±0.00 N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000006273 ENSMUST00000006435 43.720±7.19 23.851±1.21 24.807±2.25 74.268±19.97 31.378±4.87 18.743±3.22 24.043±0.27 122.062±12.92 23.157±9.61 42.677±2.71 16.369±1.43 31.100±5.79 56.129±26.98 11.567±4.36
ENSMUST00000123290 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000125211 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000129797 N/A N/A N/A N/A N/A 18.340±2.84 N/A N/A N/A N/A N/A 25.723±2.69 N/A N/A
ENSMUST00000153079 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153680 N/A 32.434±1.28 N/A N/A N/A 17.537±0.17 N/A N/A N/A N/A N/A 38.203±0.00 N/A N/A
ENSMUSG00000036330 ENSMUST00000037478 0.296±0.07 11.132±3.60 0.348±0.04 0.078±0.05 0.399±0.22 1.850±0.96 0.084±0.00 67.325±6.02 0.986±0.53 0.962±0.28 0.077±0.03 0.301±0.15 1.894±1.57 0.270±0.20
ENSMUST00000142548 N/A N/A N/A N/A N/A 0.496±0.00 N/A N/A N/A N/A 0.047±0.00 0.250±0.18 N/A N/A
ENSMUST00000142710 N/A N/A N/A 0.159±0.00 N/A N/A 0.277±0.00 N/A N/A N/A 0.262±0.00 0.836±0.17 N/A N/A
ENSMUST00000147674 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.092±0.00
ENSMUST00000148856 N/A N/A N/A 0.074±0.00 N/A N/A N/A N/A N/A N/A N/A 0.137±0.00 N/A N/A
ENSMUSG00000089995 ENSMUST00000162457 0.364±0.17 1.078±0.32 0.245±0.09 1.806±1.75 0.678±0.08 0.599±0.00 0.179±0.02 0.521±0.28 0.800±0.53 1.338±0.60 0.088±0.00 1.863±1.28 0.155±0.11 2.823±2.59
ENSMUSG00000090108 ENSMUST00000161007 0.469±0.32 0.635±0.25 0.371±0.03 1.531±0.40 0.514±0.44 0.805±0.00 0.332±0.13 N/A 0.654±0.40 0.458±0.29 0.420±0.13 1.169±0.26 0.706±0.09 0.389±0.00

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