C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: peroxisome proliferator-activated receptor gamma, coactivator-related 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000278070 PPRC1-001 ENSG00000148840 9606 + 10:102133030-102150325 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000278070
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000278070 4.732±0.00 1.978±0.00 0.684±0.00 0.548±0.00 1.901±1.12 2.295±0.00 1.191±0.00 1.013±0.00 0.807±0.59 3.346±1.88 5.645±0.00 5.299±4.27 4.775±1.21 4.220±1.11

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00058F CIL_00058F_0001 CGP 10:102107560-102150331
CIL_0005WF CIL_0005WF_0001 CGP 10:102132994-102163871

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000062322 Pprc1-002 protein_coding Mus_musculus 0 2556
ENSMUST00000111899 Pprc1-001 protein_coding Mus_musculus 0 2543
ENSMUST00000153111 Pprc1-004 retained_intron Mus_musculus 0 1842
ENSMUST00000099392 Pprc1-003 protein_coding Mus_musculus 0 1328
ENSMUST00000126127 Pprc1-009 protein_coding Mus_musculus 0 507
ENSMUST00000135327 Pprc1-006 protein_coding Mus_musculus 0 431
ENSMUST00000150158 Pprc1-007 protein_coding Mus_musculus 0 374
ENSMUST00000146882 Pprc1-012 retained_intron Mus_musculus 0 313
ENSMUST00000133101 Pprc1-011 processed_transcript Mus_musculus 0 198

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