C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: lin-7 homolog C (C. elegans)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000278193 LIN7C-002 ENSG00000148943 9606 - 11:27494576-27506773 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000278193
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000278193 8.043±0.00 4.546±0.00 5.727±0.00 8.609±1.93 7.182±0.70 8.480±3.37 2.626±0.13 8.449±2.19 9.054±3.88 7.047±2.64 1.189±0.74 6.460±2.81 2.113±1.49 3.991±0.89

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00078E CIL_00078E_0002 CGP 11:27494576-27722058

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002011 IMP morphogenesis of an epithelial sheet
GO:0005515 IEA protein binding
GO:0005737 IDA cytoplasm
GO:0005886 IDA plasma membrane
GO:0005911 IDA cell-cell junction
GO:0005923 IEA tight junction
GO:0006887 IEA exocytosis
GO:0007269 IEA neurotransmitter secretion
GO:0008092 IPI cytoskeletal protein binding
GO:0015031 IEA protein transport
GO:0019904 IPI protein domain specific binding
GO:0030165 IEA PDZ domain binding
GO:0043005 IEA neuron projection
GO:0045202 IEA synapse
GO:0045211 IEA postsynaptic membrane
GO:0070062 IDA extracellular vesicular exosome
GO:0097016 IDA L27 domain binding
GO:0097025 IDA MPP7-DLG1-LIN7 complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000028583 Lin7c-001 protein_coding Mus_musculus 0 1315
ENSMUST00000151163 Lin7c-002 retained_intron Mus_musculus 0 610

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