C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00078E_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000027322-ENSDARG00000018817 CGP 7955 7:33236844-33276180
GeneTranscriptPositionBiotype
ENSDARG00000018817 (bdnf)
brain-derived neurotrophic factor 		ENSDART00000014843 (bdnf-001) 33259493-33267233 protein_coding
ENSDART00000075389 (bdnf-002) 33260362-33276180 protein_coding
ENSDART00000131009 (bdnf-005) 33260021-33275100 protein_coding
ENSDART00000132353 (bdnf-004) 33260585-33273448 protein_coding
ENSDART00000144682 (bdnf-003) 33260625-33275840 protein_coding
ENSDARG00000027322 (lin7c)
lin-7 homolog C (C. elegans) 		ENSDART00000035710 (lin7c-201) 33236844-33256101 protein_coding
ENSDART00000146720 (lin7c-001) 33239838-33256126 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_00078E_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000148943-ENSG00000176697 CGP 9606 11:27494576-27722058
GeneTranscriptPositionBiotype
ENSG00000148943 (LIN7C)
lin-7 homolog C (C. elegans) 		ENST00000278193 (LIN7C-002) 27494576-27506773 protein_coding
ENST00000524596 (LIN7C-001) 27494898-27506769 protein_coding
ENSG00000240036 (RP11-587D21.1)
 ENST00000476147 (RP11-587D21.1-001) 27581680-27582055 processed_pseudogene
ENSG00000245573 (BDNF-AS)
BDNF antisense RNA 		ENST00000499008 (BDNF-AS-002) 27506852-27677807 antisense
ENST00000499568 (BDNF-AS-007) 27506852-27698174 antisense
ENST00000500662 (BDNF-AS-006) 27506852-27698174 antisense
ENST00000501176 (BDNF-AS-001) 27506852-27677807 antisense
ENST00000501663 (BDNF-AS-011) 27665260-27677807 antisense
ENST00000502161 (BDNF-AS-005) 27506852-27698174 antisense
ENST00000530313 (BDNF-AS-009) 27639889-27659649 antisense
ENST00000530686 (BDNF-AS-008) 27506838-27675978 antisense
ENST00000532965 (BDNF-AS-010) 27506849-27658333 antisense
ENSG00000254934 (LINC00678)
long intergenic non-protein coding RNA 678 		ENST00000527083 (LINC00678-001) 27617626-27634522 lincRNA
ENST00000534757 (LINC00678-002) 27617993-27634627 lincRNA
ENSG00000255496 (RP11-587D21.4)
 ENST00000530663 (RP11-587D21.4-001) 27696312-27877648 sense_overlapping

Homo sapiens Ensembl (GRCh38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00078E_0001ENSDARG00000018817ENSDART00000014843ENSDART00000075389ENSDART00000131009ENSDART00000132353ENSDART00000144682ENSDARG00000027322ENSDART00000035710ENSDART00000146720CIL_00078E_0002ENSG00000148943ENST00000278193ENST00000524596ENSG00000240036ENST00000476147ENSG00000245573ENST00000499008ENST00000499568ENST00000500662ENST00000501176ENST00000501663ENST00000502161ENST00000530313ENST00000530686ENST00000532965ENSG00000254934ENST00000527083ENST00000534757ENSG00000255496ENST00000530663
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00078E_0001ENSDARG00000018817ENSDART00000014843ENSDART00000131009ENSDART00000132353ENSDARG00000027322ENSDART00000035710ENSDART00000146720CIL_00078E_0002ENSG00000148943ENST00000278193ENST00000524596ENSG00000240036ENST00000476147ENSG00000245573ENST00000499008ENST00000499568ENST00000500662ENST00000501176ENST00000501663ENST00000530686ENST00000532965ENSG00000254934ENST00000527083ENST00000534757ENSG00000255496ENST00000530663
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000018817 ENSDART00000014843 N/A N/A N/A 13.367±4.93 N/A N/A 0.366±0.20 0.167±0.00 N/A N/A 0.596±0.00 N/A N/A N/A
ENSDART00000075389 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000131009 N/A N/A N/A 8.968±0.00 N/A N/A N/A 2.734±0.00 N/A N/A 0.409±0.00 N/A N/A N/A
ENSDART00000132353 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.263±0.00 N/A N/A N/A
ENSDART00000144682 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000027322 ENSDART00000035710 N/A N/A N/A N/A N/A N/A 3.335±1.73 5.118±0.00 0.439±0.00 N/A 1.194±0.00 N/A N/A N/A
ENSDART00000146720 N/A N/A N/A 12.581±0.00 N/A N/A 3.667±0.00 N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000148943 ENST00000278193 8.043±0.00 4.546±0.00 5.727±0.00 8.609±1.93 7.182±0.70 8.480±3.37 2.626±0.13 8.449±2.19 9.054±3.88 7.047±2.64 1.189±0.74 6.460±2.81 2.113±1.49 3.991±0.89
ENST00000524596 N/A N/A N/A N/A N/A N/A 0.605±0.04 N/A N/A N/A 0.638±0.00 N/A N/A N/A
ENSG00000240036 ENST00000476147 0.117±0.00 0.836±0.00 0.904±0.00 N/A 0.118±0.00 0.186±0.00 0.157±0.12 0.355±0.00 0.035±0.00 0.110±0.00 0.149±0.00 0.359±0.24 0.461±0.05 0.071±0.00
ENSG00000245573 ENST00000499008 N/A N/A 0.623±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.700±0.16
ENST00000499568 N/A N/A N/A 1.258±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000500662 N/A N/A N/A N/A 0.210±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000501176 N/A N/A N/A 1.666±0.00 0.246±0.00 N/A N/A N/A N/A 0.687±0.00 N/A 0.356±0.20 0.682±0.00 N/A
ENST00000501663 0.088±0.00 N/A N/A N/A 0.693±0.00 0.306±0.00 N/A 1.164±0.00 0.203±0.00 N/A N/A N/A N/A N/A
ENST00000502161 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000530313 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000530686 N/A N/A N/A N/A 0.430±0.00 N/A 0.217±0.00 0.596±0.00 0.160±0.00 N/A 0.125±0.00 0.582±0.33 1.419±0.00 2.496±0.00
ENST00000532965 0.239±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000254934 ENST00000527083 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.232±0.00 N/A N/A
ENST00000534757 0.151±0.00 0.448±0.00 N/A 0.387±0.31 0.080±0.00 0.092±0.00 0.104±0.00 N/A 0.033±0.00 0.119±0.00 0.082±0.00 0.048±0.00 0.171±0.00 0.400±0.26
ENSG00000255496 ENST00000530663 N/A N/A N/A 0.274±0.00 N/A N/A 0.122±0.00 0.067±0.00 N/A N/A N/A N/A N/A N/A

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