C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Y box binding protein 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000279550 YBX3-003 ENSG00000060138 9606 - 12:10699089-10723307 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000279550
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000279550 107.956±0.00 67.943±0.00 0.514±0.00 48.082±36.38 64.421±57.51 77.272±69.83 52.013±0.00 6.787±0.00 181.275±0.00 1822.722±1715.09 40.364±25.33 31.778±11.37 135.488±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000K7 CIL_0000K7_0001 CGP 12:10618939-10723312

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0003690 TAS double-stranded DNA binding
GO:0003700 NAS sequence-specific DNA binding transcription factor activity
GO:0003714 TAS transcription corepressor activity
GO:0003730 ISS mRNA 3'-UTR binding
GO:0005634 ISS nucleus
GO:0005737 IDA cytoplasm
GO:0005923 ISS tight junction
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0009409 TAS response to cold
GO:0017048 ISS Rho GTPase binding
GO:0044822 IDA poly(A) RNA binding
GO:0048471 ISS perinuclear region of cytoplasm
GO:0060546 IMP negative regulation of necroptotic process
GO:0070935 IC 3'-UTR-mediated mRNA stabilization
GO:0071356 IMP cellular response to tumor necrosis factor
GO:0071474 IMP cellular hyperosmotic response
GO:1902219 IMP negative regulation of intrinsic apoptotic signaling pathway in response to osmotic stress
GO:2000767 ISS positive regulation of cytoplasmic translation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000087865 Ybx3-202 protein_coding Mus_musculus 0 1580
ENSMUST00000032309 Ybx3-201 protein_coding Mus_musculus 0 887

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