C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: glucoside xylosyltransferase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000280876 GXYLT1-002 ENSG00000151233 9606 - 12:42087145-42144712 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainKidneyLiverLungMuscleOvaryTestisENST00000280876
Transcript ID Bladder Brain Kidney Liver Lung Muscle Ovary Testis
ENST00000280876 0.830±0.00 0.340±0.00 1.071±0.00 0.847±0.00 1.100±0.00 0.462±0.00 1.698±0.00 2.617±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003DL CIL_0003DL_0002 CGP 12:41188448-42144879
CIL_0006R1 CIL_0006R1_0001 CGP 12:42081845-42238349

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000139 TAS Golgi membrane
GO:0005975 TAS carbohydrate metabolic process
GO:0016021 IEA integral component of membrane
GO:0016266 IDA O-glycan processing
GO:0016757 IEA transferase activity, transferring glycosyl groups
GO:0030203 TAS glycosaminoglycan metabolic process
GO:0030204 TAS chondroitin sulfate metabolic process
GO:0035252 IDA UDP-xylosyltransferase activity
GO:0044281 TAS small molecule metabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000057896 Gxylt1-002 protein_coding Mus_musculus 0 1144
ENSMUST00000049484 Gxylt1-001 protein_coding Mus_musculus 0 1046
ENSMUST00000117335 Gm11821-001 processed_pseudogene Mus_musculus 0 976

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