C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003DL_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000045687-ENSDARG00000022550 CGP 7955 4:12875335-12966712
GeneTranscriptPositionBiotype
ENSDARG00000022550 (gxylt1b)
glucoside xylosyltransferase 1b 		ENSDART00000032805 (gxylt1b-001) 12957297-12966712 protein_coding
ENSDARG00000045687 (pdzrn4)
PDZ domain containing ring finger 4 		ENSDART00000067168 (pdzrn4-001) 12875335-12925969 protein_coding
ENSDARG00000045692 (pphln1)
periphilin 1 		ENSDART00000067175 (pphln1-001) 12996271-13027964 protein_coding
ENSDART00000133596 (pphln1-005) 13018061-13027456 protein_coding
ENSDART00000137549 (pphln1-004) 12965982-13008667 protein_coding
ENSDART00000141742 (pphln1-003) 12996257-13008526 protein_coding
ENSDART00000142466 (pphln1-002) 12996102-13011910 protein_coding

Danio rerio Ensembl (Zv9)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11
CIL_0003DL_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000165966-ENSG00000151233 CGP 9606 12:41188448-42144879
GeneTranscriptPositionBiotype
ENSG00000151233 (GXYLT1)
glucoside xylosyltransferase 1 		ENST00000280876 (GXYLT1-002) 42087145-42144712 protein_coding
ENST00000398675 (GXYLT1-001) 42081845-42144879 protein_coding
ENSG00000165966 (PDZRN4)
PDZ domain containing ring finger 4 		ENST00000298919 (PDZRN4-003) 41437739-41574582 protein_coding
ENST00000402685 (PDZRN4-001) 41188448-41574118 protein_coding
ENST00000539469 (PDZRN4-002) 41437683-41574332 protein_coding
ENST00000548316 (PDZRN4-004) 41509551-41574590 retained_intron
ENSG00000222884 (AC023513.1)
 ENST00000410952 (AC023513.1-201) 42079761-42079882 miRNA
ENSG00000257128 (RP11-2A1.1)
 ENST00000546669 (RP11-2A1.1-001) 41911256-41912212 processed_pseudogene
ENSG00000257228 (RP11-413B19.2)
 ENST00000547168 (RP11-413B19.2-001) 41409467-41473510 antisense
ENST00000548450 (RP11-413B19.2-002) 41411525-41412477 antisense
ENSG00000257239 (RP11-630C16.2)
 ENST00000550874 (RP11-630C16.2-001) 41829898-41932592 lincRNA
ENSG00000257784 (RP11-630C16.1)
 ENST00000548210 (RP11-630C16.1-001) 41764223-41765558 lincRNA
ENST00000552712 (RP11-630C16.1-002) 41764189-41765581 lincRNA
ENSG00000257858 (MTND1P24)
MT-ND1 pseudogene 24 		ENST00000552175 (MTND1P24-001) 41699391-41700251 unprocessed_pseudogene
ENSG00000258239 (MTND2P17)
MT-ND2 pseudogene 17 		ENST00000550281 (MTND2P17-001) 41698495-41699182 unprocessed_pseudogene
ENSG00000271379 (RP11-440G2.2)
 ENST00000604396 (RP11-440G2.2-001) 42069935-42070625 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11
CIL_0003DL_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000036218-ENSMUSG00000036197 CGP 10090 15:92396915-93275161
GeneTranscriptPositionBiotype
ENSMUSG00000036197 (Gxylt1)
glucoside xylosyltransferase 1 		ENSMUST00000049484 (Gxylt1-001) 93239742-93275161 protein_coding
ENSMUST00000057896 (Gxylt1-002) 93244455-93275151 protein_coding
ENSMUSG00000036218 (Pdzrn4)
PDZ domain containing RING finger 4 		ENSMUST00000035399 (Pdzrn4-201) 92597109-92771819 protein_coding
ENSMUST00000169942 (Pdzrn4-202) 92396915-92771819 protein_coding
ENSMUSG00000065911 (Gm24447)
predicted gene, 24447 		ENSMUST00000083977 (Gm24447-201) 93234363-93234700 misc_RNA
ENSMUSG00000097989 (Gm4335)
predicted gene 4335 		ENSMUST00000182581 (Gm4335-001) 93196595-93197598 processed_pseudogene

Mus musculus Ensembl (GRCm38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003DL_0001ENSDARG00000022550ENSDART00000032805ENSDARG00000045687ENSDART00000067168ENSDARG00000045692ENSDART00000067175ENSDART00000133596ENSDART00000137549ENSDART00000141742ENSDART00000142466CIL_0003DL_0002ENSG00000151233ENST00000280876ENST00000398675ENSG00000165966ENST00000298919ENST00000402685ENST00000539469ENST00000548316ENSG00000222884ENST00000410952ENSG00000257128ENST00000546669ENSG00000257228ENST00000547168ENST00000548450ENSG00000257239ENST00000550874ENSG00000257784ENST00000548210ENST00000552712ENSG00000257858ENST00000552175ENSG00000258239ENST00000550281ENSG00000271379ENST00000604396CIL_0003DL_0003ENSMUSG00000036197ENSMUST00000049484ENSMUST00000057896ENSMUSG00000036218ENSMUST00000035399ENSMUST00000169942ENSMUSG00000065911ENSMUST00000083977ENSMUSG00000097989ENSMUST00000182581
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003DL_0001ENSDARG00000022550ENSDART00000032805ENSDARG00000045687ENSDART00000067168ENSDARG00000045692ENSDART00000067175ENSDART00000141742ENSDART00000142466CIL_0003DL_0002ENSG00000151233ENST00000280876ENST00000398675ENSG00000165966ENST00000298919ENST00000402685ENST00000539469ENST00000548316ENSG00000222884ENST00000410952ENSG00000257128ENST00000546669ENSG00000257228ENST00000547168ENST00000548450ENSG00000257239ENST00000550874ENSG00000257784ENST00000548210ENST00000552712ENSG00000257858ENST00000552175ENSG00000258239ENST00000550281ENSG00000271379ENST00000604396CIL_0003DL_0003ENSMUSG00000036197ENSMUST00000049484ENSMUST00000057896ENSMUSG00000036218ENSMUST00000035399ENSMUST00000169942ENSMUSG00000065911ENSMUST00000083977ENSMUSG00000097989ENSMUST00000182581
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000022550 ENSDART00000032805 N/A N/A N/A 1.015±0.50 N/A N/A 0.660±0.24 1.124±0.74 N/A N/A 0.074±0.00 N/A N/A N/A
ENSDARG00000045687 ENSDART00000067168 N/A N/A N/A 1.859±0.22 N/A N/A 0.047±0.01 0.429±0.00 0.012±0.00 N/A 0.221±0.00 N/A N/A N/A
ENSDARG00000045692 ENSDART00000067175 N/A N/A N/A 7.863±2.18 N/A N/A 8.840±5.03 12.734±5.17 1.096±0.00 N/A 3.336±0.00 N/A N/A N/A
ENSDART00000133596 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000137549 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000141742 N/A N/A N/A N/A N/A N/A 3.944±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSDART00000142466 N/A N/A N/A N/A N/A N/A N/A N/A 0.381±0.00 N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000151233 ENST00000280876 N/A N/A 0.830±0.00 0.340±0.00 N/A N/A N/A 1.071±0.00 0.847±0.00 1.100±0.00 0.462±0.00 1.698±0.00 N/A 2.617±0.00
ENST00000398675 0.420±0.00 N/A N/A 0.258±0.00 0.392±0.20 0.376±0.24 0.564±0.23 1.171±0.00 0.523±0.00 1.432±0.00 0.174±0.00 0.646±0.30 1.042±0.46 2.668±0.99
ENSG00000165966 ENST00000298919 N/A N/A N/A N/A N/A N/A 0.022±0.00 N/A N/A 0.335±0.00 0.138±0.00 N/A N/A N/A
ENST00000402685 0.092±0.00 1.423±0.00 N/A 0.779±0.17 1.029±0.72 3.031±1.36 0.034±0.00 0.153±0.00 3.304±3.29 0.202±0.10 0.110±0.00 0.547±0.25 1.321±1.25 2.235±0.32
ENST00000539469 0.070±0.00 N/A N/A 0.324±0.11 N/A N/A 0.093±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000548316 0.145±0.00 0.486±0.00 0.246±0.00 0.411±0.00 0.472±0.35 2.881±1.79 0.048±0.00 0.201±0.02 0.060±0.00 0.553±0.00 0.070±0.00 0.121±0.00 1.238±0.00 1.412±0.73
ENSG00000222884 ENST00000410952 N/A 0.424±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000257128 ENST00000546669 N/A N/A N/A N/A 0.956±0.00 0.741±0.00 N/A N/A 0.121±0.00 0.393±0.00 N/A 0.440±0.00 N/A N/A
ENSG00000257228 ENST00000547168 0.037±0.00 0.110±0.00 N/A 0.012±0.00 0.035±0.00 0.033±0.00 0.033±0.00 N/A N/A N/A N/A N/A 0.027±0.00 0.104±0.03
ENST00000548450 N/A 0.042±0.00 N/A N/A N/A N/A N/A N/A 2.358±0.00 N/A N/A N/A 0.036±0.00 N/A
ENSG00000257239 ENST00000550874 0.152±0.00 0.539±0.00 N/A 0.133±0.00 0.438±0.00 N/A 0.150±0.00 0.614±0.00 0.210±0.00 N/A 0.347±0.00 0.114±0.00 N/A 0.228±0.13
ENSG00000257784 ENST00000548210 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.119±0.26
ENST00000552712 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.763±0.15
ENSG00000257858 ENST00000552175 N/A N/A N/A N/A N/A N/A 0.196±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000258239 ENST00000550281 N/A 0.027±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.075±0.00
ENSG00000271379 ENST00000604396 N/A 0.073±0.00 N/A N/A N/A 0.016±0.00 0.034±0.00 N/A N/A N/A N/A N/A N/A 0.087±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000036197 ENSMUST00000049484 1.156±0.53 2.507±0.78 0.500±0.00 0.390±0.00 2.174±0.13 2.145±0.00 0.563±0.00 0.936±0.52 0.634±0.15 1.493±0.00 0.205±0.05 2.153±0.41 3.783±3.25 N/A
ENSMUST00000057896 N/A 1.810±0.00 N/A N/A 4.155±0.80 N/A N/A N/A N/A 3.503±0.00 N/A 4.064±1.36 11.902±0.00 9.316±2.04
ENSMUSG00000036218 ENSMUST00000035399 0.180±0.10 0.028±0.00 0.065±0.05 4.336±3.34 0.045±0.01 N/A N/A 0.175±0.03 0.011±0.01 N/A 0.122±0.07 0.499±0.44 0.012±0.01 0.365±0.10
ENSMUST00000169942 N/A 0.041±0.02 0.054±0.01 1.361±0.00 N/A 0.126±0.06 0.494±0.11 0.051±0.01 0.011±0.01 0.096±0.02 N/A 1.207±0.97 0.018±0.00 N/A
ENSMUSG00000065911 ENSMUST00000083977 0.502±0.21 0.188±0.02 149.583±149.53 740.389±0.00 0.569±0.27 0.287±0.05 0.190±0.00 0.402±0.30 175.451±12.69 0.545±0.24 N/A 0.971±0.29 0.077±0.02 0.713±0.40
ENSMUSG00000097989 ENSMUST00000182581 0.271±0.24 0.256±0.15 0.811±0.63 0.180±0.17 0.365±0.32 0.138±0.05 0.427±0.27 0.362±0.22 0.222±0.23 N/A 0.452±0.08 0.175±0.07 0.149±0.07 0.053±0.01

Loading