C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cingulin-like 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000281282 CGNL1-001 ENSG00000128849 9606 + 15:57376505-57550727 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000281282
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000281282 0.896±0.00 2.607±0.00 14.986±0.00 2.503±1.48 1.870±1.19 2.069±1.59 2.542±1.02 26.627±17.68 4.707±1.26 6.043±0.71 0.441±0.35 5.587±3.92 11.815±1.27 6.240±2.99

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008VA CIL_0008VA_0001 VISTA 15:56833046-57433760
CIL_0007TG CIL_0007TG_0001 VISTA 15:56833830-57434754

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003774 IEA motor activity
GO:0005923 IEA tight junction
GO:0008152 IEA metabolic process
GO:0015629 IEA actin cytoskeleton
GO:0016459 IEA myosin complex
GO:0043296 IEA apical junction complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000072899 Cgnl1-201 protein_coding Mus_musculus 0 3363
ENSMUST00000122065 Cgnl1-001 protein_coding Mus_musculus 0 3349
ENSMUST00000121322 Cgnl1-003 protein_coding Mus_musculus 0 1467
ENSMUST00000152224 Cgnl1-004 retained_intron Mus_musculus 0 472
ENSMUST00000136044 Cgnl1-002 retained_intron Mus_musculus 0 381
ENSMUST00000146567 Cgnl1-005 processed_transcript Mus_musculus 0 339
ENSMUST00000162527 Nup43-002 retained_intron Mus_musculus 0.0000008 62

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