C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nucleoporin 43
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000162527 Nup43-002 ENSMUSG00000040034 10090 + 10:7667540-7676080 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalLiverOvaryPlacentaENSMUST00000162527
Transcript ID Adrenal Liver Ovary Placenta
ENSMUST00000162527 0.227±0.04 0.171±0.02 1.086±0.00 0.154±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005X2 CIL_0005X2_0002 CGP 10:7589800-7681136
CIL_00050T CIL_00050T_0002 CGP 10:7629373-7681136

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000267101 ERBB3-001 protein_coding Homo_sapiens 0.000002 60
ENST00000281282 CGNL1-001 protein_coding Homo_sapiens 0.0000008 62
ENST00000311841 RP11-446E24.4-001 nonsense_mediated_decay Homo_sapiens 0.0002 53
ENST00000324309 CCDC149-003 retained_intron Homo_sapiens 0.0004 53
ENST00000340413 NUP43-004 protein_coding Homo_sapiens 0 1013
ENST00000360187 ZNF605-001 protein_coding Homo_sapiens 0.0006 53
ENST00000366398 RP5-886K2.1-001 processed_pseudogene Homo_sapiens 0.00007 53
ENST00000367402 NUP43-002 nonsense_mediated_decay Homo_sapiens 0 630
ENST00000367404 NUP43-007 protein_coding Homo_sapiens 0 630
ENST00000378815 RAB3IP-006 protein_coding Homo_sapiens 0.0000009 60
ENST00000401432 EFR3B-002 protein_coding Homo_sapiens 0.0000006 62
ENST00000403890 NUP43-005 nonsense_mediated_decay Homo_sapiens 0 416
ENST00000409648 SLC35E1-007 nonsense_mediated_decay Homo_sapiens 0.00007 55
ENST00000416417 USP4-005 protein_coding Homo_sapiens 0.00003 55
ENST00000421415 CYB5RL-007 nonsense_mediated_decay Homo_sapiens 0.0002 53
ENST00000429519 MTHFD2L-005 nonsense_mediated_decay Homo_sapiens 0.000000004 68
ENST00000433372 MTHFD2L-202 protein_coding Homo_sapiens 0.000000003 68
ENST00000442225 MDH1-006 protein_coding Homo_sapiens 0.0000003 60
ENST00000463048 NUP43-003 processed_transcript Homo_sapiens 0 291
ENST00000464183 PTGES3L-006 retained_intron Homo_sapiens 0.000000002 68
ENST00000479808 SYP-004 protein_coding Homo_sapiens 0.0001 53
ENST00000479983 DOCK7-003 processed_transcript Homo_sapiens 0.0000006 60
ENST00000485450 USP4-003 retained_intron Homo_sapiens 0.00006 55
ENST00000490863 CYB5RL-003 retained_intron Homo_sapiens 0.0004 53
ENST00000497735 MAP4-008 retained_intron Homo_sapiens 0.00004 55
ENST00000498204 TJP2-005 processed_transcript Homo_sapiens 0.00001 55
ENST00000505438 AC004069.1-001 processed_pseudogene Homo_sapiens 0 719
ENST00000528287 CYB5RL-009 nonsense_mediated_decay Homo_sapiens 0.0002 53
ENST00000543637 NUP43-008 protein_coding Homo_sapiens 0 556
ENST00000549832 ERBB3-004 protein_coding Homo_sapiens 0.000001 60
ENST00000550070 ERBB3-009 protein_coding Homo_sapiens 0.000001 60
ENST00000551242 ERBB3-003 nonsense_mediated_decay Homo_sapiens 0.000001 60
ENST00000553131 ERBB3-005 protein_coding Homo_sapiens 0.000001 60
ENST00000566298 DCTN5-004 protein_coding Homo_sapiens 0.000004 57
ENST00000595753 SLC35E1-001 protein_coding Homo_sapiens 0.00009 55
ENST00000596387 SLC35E1-011 processed_transcript Homo_sapiens 0.00000001 64
ENST00000600535 ZNF714-007 processed_transcript Homo_sapiens 0.00002 55
ENST00000611092 SLC35E1-201 protein_coding Homo_sapiens 0.00004 55

Loading