C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: junctophilin 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000284262 JPH3-001 ENSG00000154118 9606 + 16:87602905-87698156 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonTestisENST00000284262
Transcript ID Brain Colon Testis
ENST00000284262 29.611±19.03 1.007±0.00 3.529±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008WG CIL_0008WG_0001 VISTA 16:87215497-87815964
CIL_00070Q CIL_00070Q_0001 CGP 16:87406246-87698156
CIL_0002SZ CIL_0002SZ_0001 CGP 16:87601835-87765992

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005783 IEA endoplasmic reticulum
GO:0005789 IEA endoplasmic reticulum membrane
GO:0005886 IEA plasma membrane
GO:0007612 IEA learning
GO:0007613 IEA memory
GO:0014701 TAS junctional sarcoplasmic reticulum membrane
GO:0015278 IEA calcium-release channel activity
GO:0016021 NAS integral component of membrane
GO:0030314 IEA junctional membrane complex
GO:0035640 IEA exploration behavior
GO:0040011 IEA locomotion
GO:0048168 IEA regulation of neuronal synaptic plasticity
GO:0050885 IEA neuromuscular process controlling balance
GO:0060314 TAS regulation of ryanodine-sensitive calcium-release channel activity
GO:0060402 TAS calcium ion transport into cytosol
GO:0070588 IEA calcium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000026357 Jph3-001 protein_coding Mus_musculus 0 2817
ENSMUST00000167439 Jph3-002 nonsense_mediated_decay Mus_musculus 0 2697
ENSMUST00000169735 Jph3-003 processed_transcript Mus_musculus 0 2047
ENSMUST00000172209 Jph3-004 retained_intron Mus_musculus 0 497

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