C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cadherin 15, type 1, M-cadherin (myotubule)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000289746 CDH15-001 ENSG00000129910 9606 + 16:89171767-89195492 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastKidneyLiverLungMuscleOvaryPlacentaTestisENST00000289746
Transcript ID Adrenal Brain Breast Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000289746 0.159±0.00 0.016±0.00 0.424±0.00 0.126±0.00 0.176±0.00 0.070±0.00 20.204±17.68 0.184±0.09 1.655±1.18 0.946±0.12

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00091T CIL_00091T_0001 VISTA 16:88690989-89294615
CIL_0008HA CIL_0008HA_0001 VISTA 16:89018329-89621235
CIL_0006AI CIL_0006AI_0002 CGP 16:89088375-89195492

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005515 IEA protein binding
GO:0005886 TAS plasma membrane
GO:0005901 IEA caveola
GO:0007155 TAS cell adhesion
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0031594 IEA neuromuscular junction
GO:0034329 TAS cell junction assembly
GO:0034332 TAS adherens junction organization
GO:0042692 TAS muscle cell differentiation
GO:0045216 TAS cell-cell junction organization
GO:0051149 TAS positive regulation of muscle cell differentiation
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000034443 Cdh15-201 protein_coding Mus_musculus 0 2100

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