C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin specific peptidase 21
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000289865 USP21-001 ENSG00000143258 9606 + 1:161159479-161165723 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000289865
Transcript ID Adipose Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000289865 2.469±0.00 2.550±0.00 3.536±0.00 1.643±1.43 2.055±0.00 0.419±0.00 6.356±0.00 3.058±0.00 12.499±7.57 5.992±2.24 6.744±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003713 ISS transcription coactivator activity
GO:0004221 ISS ubiquitin thiolesterase activity
GO:0004843 IDA ubiquitin-specific protease activity
GO:0005575 ND cellular_component
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005886 IDA plasma membrane
GO:0006351 IEA transcription, DNA-templated
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0008234 ISS cysteine-type peptidase activity
GO:0016578 ISS histone deubiquitination
GO:0019784 IDA NEDD8-specific protease activity
GO:0036459 IEA ubiquitinyl hydrolase activity
GO:0045893 ISS positive regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000065941 Usp21-001 protein_coding Mus_musculus 0 2892
ENSMUST00000111306 Usp21-002 protein_coding Mus_musculus 0 2844
ENSMUST00000111305 Usp21-004 protein_coding Mus_musculus 0 2662
ENSMUST00000149187 Usp21-003 nonsense_mediated_decay Mus_musculus 0 2085
ENSMUST00000153164 Usp21-005 retained_intron Mus_musculus 0 1105
ENSMUST00000127101 Usp21-006 retained_intron Mus_musculus 0 1068
ENSMUST00000147176 Usp21-007 retained_intron Mus_musculus 0 857
ENSMUST00000144393 Usp21-011 retained_intron Mus_musculus 0 503
ENSMUST00000126729 Usp21-009 retained_intron Mus_musculus 0 433
ENSMUST00000174720 Usp21-012 protein_coding Mus_musculus 0 388
ENSMUST00000142656 Usp21-010 retained_intron Mus_musculus 0 337
ENSMUST00000126557 Usp21-008 retained_intron Mus_musculus 0 244

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