C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: mediator complex subunit 27
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000292035 MED27-001 ENSG00000160563 9606 - 9:131860107-132079908 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000292035
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000292035 5.681±0.00 9.108±0.00 5.014±2.23 2.916±1.44 2.336±2.06 2.627±2.24 3.569±2.51 2.242±0.69 2.982±1.56 3.506±3.28 11.379±7.71 17.704±6.97 21.278±11.93

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002EB CIL_0002EB_0002 CGP 9:131576770-132079908
CIL_0002EG CIL_0002EG_0002 CGP 9:131860107-132244534

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003713 IDA transcription coactivator activity
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005667 IDA transcription factor complex
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0006357 IDA regulation of transcription from RNA polymerase II promoter
GO:0006367 TAS transcription initiation from RNA polymerase II promoter
GO:0010467 TAS gene expression
GO:0016592 IEA mediator complex
GO:0019827 IEA stem cell maintenance

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000028139 Med27-001 protein_coding Mus_musculus 0 1131
ENSMUST00000159280 Med27-008 protein_coding Mus_musculus 0 693
ENSMUST00000113830 Med27-002 protein_coding Mus_musculus 0 691
ENSMUST00000123522 Med27-003 processed_transcript Mus_musculus 0 525
ENSMUST00000147547 Med27-004 processed_transcript Mus_musculus 0 326

Loading