C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor, 65kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000294168 TAF6L-001 ENSG00000162227 9606 + 11:62771303-62787342 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainHeartKidneyLungMuscleOvaryPlacentaTestisENST00000294168
Transcript ID Adipose Adrenal Brain Heart Kidney Lung Muscle Ovary Placenta Testis
ENST00000294168 3.776±0.00 9.563±0.00 4.220±0.00 3.742±0.00 5.913±4.36 0.792±0.00 5.593±0.00 6.220±3.80 6.113±0.98 4.288±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089X CIL_00089X_0001 VISTA 11:62298635-62900076

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000118 TAS histone deacetylase complex
GO:0003677 TAS DNA binding
GO:0003713 IDA transcription coactivator activity
GO:0004402 IDA histone acetyltransferase activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0006325 TAS chromatin organization
GO:0006338 TAS chromatin remodeling
GO:0006352 IEA DNA-templated transcription, initiation
GO:0006357 TAS regulation of transcription from RNA polymerase II promoter
GO:0030914 IDA STAGA complex
GO:0043966 IDA histone H3 acetylation
GO:0046982 IEA protein heterodimerization activity
GO:0051090 IEA regulation of sequence-specific DNA binding transcription factor activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000177056 Taf6l-005 protein_coding Mus_musculus 0 1934
ENSMUST00000003777 Taf6l-201 protein_coding Mus_musculus 0 1925
ENSMUST00000177216 Taf6l-004 protein_coding Mus_musculus 0 1925
ENSMUST00000176610 Taf6l-001 protein_coding Mus_musculus 0 1925
ENSMUST00000176496 Taf6l-002 protein_coding Mus_musculus 0 1173
ENSMUST00000189739 Taf6l-203 protein_coding Mus_musculus 0 1171
ENSMUST00000176688 Taf6l-003 retained_intron Mus_musculus 0 1003
ENSMUST00000176331 Taf6l-008 retained_intron Mus_musculus 0 662
ENSMUST00000176747 Taf6l-011 retained_intron Mus_musculus 0 616
ENSMUST00000176991 Taf6l-009 retained_intron Mus_musculus 0 448
ENSMUST00000176080 Taf6l-006 retained_intron Mus_musculus 2.00386e-43 182

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