C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: glucocorticoid modulatory element binding protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000294409 GMEB1-003 ENSG00000162419 9606 + 1:28668780-28714873 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartLiverLungMuscleOvaryPlacentaTestisENST00000294409
Transcript ID Adipose Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENST00000294409 2.792±0.00 0.514±0.00 1.500±0.00 1.242±0.20 0.250±0.00 1.144±0.00 1.392±0.00 1.104±0.95 1.826±0.78 1.263±0.00 4.283±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00099N CIL_00099N_0001 VISTA 1:28583201-29186892
CIL_0003PX CIL_0003PX_0002 CGP 1:28592200-28719353

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0003713 IEA transcription coactivator activity
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000168553 Gmeb1-201 protein_coding Mus_musculus 0 2030
ENSMUST00000105964 Gmeb1-003 protein_coding Mus_musculus 0 2030
ENSMUST00000030733 Gmeb1-002 protein_coding Mus_musculus 0 2030
ENSMUST00000105965 Gmeb1-001 protein_coding Mus_musculus 0 2030
ENSMUST00000131763 Gmeb1-006 retained_intron Mus_musculus 0 398
ENSMUST00000125534 Gmeb1-004 retained_intron Mus_musculus 0 359

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