C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003PX_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000034215-ENSDARG00000062060 CGP 7955 19:15464417-15521221
GeneTranscriptPositionBiotype
ENSDARG00000034215 (rab42a)
RAB42, member RAS oncogene family a 		ENSDART00000046530 (rab42a-001) 15464417-15468181 protein_coding
ENSDARG00000062060 (gmeb1)
glucocorticoid modulatory element binding protein 1 		ENSDART00000103767 (gmeb1-201) 15502438-15519691 protein_coding
ENSDART00000138709 (gmeb1-001) 15500479-15518725 protein_coding
ENSDART00000144376 (gmeb1-002) 15496497-15516135 nonsense_mediated_decay
ENSDART00000151169 (gmeb1-004) 15496473-15521221 protein_coding

Danio rerio Ensembl (Zv9)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11
CIL_0003PX_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000188060-ENSG00000162419 CGP 9606 1:28592200-28719353
GeneTranscriptPositionBiotype
ENSG00000120656 (TAF12)
TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 20kDa 		ENST00000263974 (TAF12-001) 28603101-28643005 protein_coding
ENST00000373824 (TAF12-002) 28602850-28643066 protein_coding
ENST00000471683 (TAF12-003) 28589323-28618030 processed_transcript
ENST00000495422 (TAF12-004) 28613247-28643085 processed_transcript
ENSG00000162419 (GMEB1)
glucocorticoid modulatory element binding protein 1 		ENST00000294409 (GMEB1-003) 28668780-28714873 protein_coding
ENST00000361872 (GMEB1-002) 28668778-28714886 protein_coding
ENST00000373816 (GMEB1-001) 28668732-28719353 protein_coding
ENST00000480454 (GMEB1-005) 28683564-28715065 processed_transcript
ENSG00000188060 (RAB42)
RAB42, member RAS oncogene family 		ENST00000373826 (RAB42-001) 28592200-28595443 protein_coding
ENST00000465518 (RAB42-002) 28592515-28594300 processed_transcript
ENSG00000229388 (RP11-442N24__B.1)
 ENST00000420776 (RP11-442N24__B.1-001) 28643228-28648530 lincRNA
ENST00000427804 (RP11-442N24__B.1-002) 28646091-28648581 lincRNA
ENSG00000252777 (SCARNA24)
Small Cajal body specific RNA 24 		ENST00000516968 (SCARNA24.1-202) 28689665-28689794 snoRNA
ENSG00000270103 (RNU11)
RNA, U11 small nuclear 		ENST00000602813 (RNU11-001) 28648600-28648730 lincRNA
ENSG00000274978 (U11)
U11 spliceosomal RNA 		ENST00000387069 (U11.1-201) 28648600-28648733 snRNA

Homo sapiens Ensembl (GRCh38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003PX_0001ENSDARG00000034215ENSDART00000046530ENSDARG00000062060ENSDART00000103767ENSDART00000138709ENSDART00000144376ENSDART00000151169CIL_0003PX_0002ENSG00000120656ENST00000263974ENST00000373824ENST00000471683ENST00000495422ENSG00000162419ENST00000294409ENST00000361872ENST00000373816ENST00000480454ENSG00000188060ENST00000373826ENST00000465518ENSG00000229388ENST00000420776ENST00000427804ENSG00000252777ENST00000516968ENSG00000270103ENST00000602813ENSG00000274978ENST00000387069
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003PX_0001ENSDARG00000034215ENSDART00000046530ENSDARG00000062060ENSDART00000103767ENSDART00000138709ENSDART00000151169CIL_0003PX_0002ENSG00000120656ENST00000263974ENST00000373824ENST00000471683ENST00000495422ENSG00000162419ENST00000294409ENST00000361872ENST00000373816ENST00000480454ENSG00000188060ENST00000373826ENST00000465518ENSG00000229388ENST00000420776ENST00000427804ENSG00000252777ENST00000516968ENSG00000270103ENST00000602813ENSG00000274978ENST00000387069
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000034215 ENSDART00000046530 N/A N/A N/A 15.026±0.00 N/A N/A N/A 0.067±0.00 N/A N/A 0.816±0.00 N/A N/A N/A
ENSDARG00000062060 ENSDART00000103767 N/A N/A N/A 8.298±2.86 N/A N/A 4.468±1.15 2.591±0.75 1.179±0.00 N/A 1.769±0.00 N/A N/A N/A
ENSDART00000138709 N/A N/A N/A 2.008±0.92 N/A N/A 1.671±0.20 N/A N/A N/A 0.579±0.00 N/A N/A N/A
ENSDART00000144376 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000151169 N/A N/A N/A 2.138±0.60 N/A N/A 1.338±0.87 1.138±0.00 0.370±0.00 N/A 0.247±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000120656 ENST00000263974 6.194±0.00 4.885±0.00 N/A 1.421±1.10 7.974±0.00 8.862±0.00 6.393±0.00 8.892±0.00 4.933±0.00 5.573±0.00 10.218±0.00 7.640±2.60 6.937±1.09 14.734±0.00
ENST00000373824 5.855±0.00 2.714±0.00 1.746±0.00 2.498±0.22 2.545±0.16 1.974±0.38 0.778±0.00 3.019±0.00 1.642±0.55 2.178±1.21 N/A 5.394±2.41 8.631±6.57 7.842±2.58
ENST00000471683 N/A N/A N/A N/A N/A N/A N/A 3.881±0.00 N/A N/A N/A N/A N/A N/A
ENST00000495422 N/A N/A N/A 1.621±0.00 N/A 4.268±0.00 2.903±0.85 N/A N/A 2.364±0.00 N/A N/A 17.504±0.00 N/A
ENSG00000162419 ENST00000294409 2.792±0.00 N/A N/A 0.514±0.00 1.500±0.00 1.242±0.20 0.250±0.00 N/A 1.144±0.00 1.392±0.00 1.104±0.95 1.826±0.78 1.263±0.00 4.283±0.00
ENST00000361872 N/A 1.984±0.00 1.062±0.00 1.357±0.00 N/A 0.519±0.00 0.966±0.00 1.115±0.00 1.643±0.00 1.838±0.10 0.909±0.00 2.775±1.93 3.327±1.86 4.840±1.26
ENST00000373816 0.378±0.00 1.363±0.00 N/A 0.566±0.10 1.506±0.00 N/A 0.871±0.00 0.979±0.85 0.672±0.20 0.568±0.08 1.194±1.16 2.035±1.20 1.102±0.03 1.584±0.07
ENST00000480454 N/A N/A 0.282±0.00 1.382±0.00 0.975±0.00 0.505±0.00 0.697±0.00 N/A N/A N/A N/A 3.093±0.00 N/A N/A
ENSG00000188060 ENST00000373826 N/A 1.173±0.00 N/A 0.214±0.17 N/A 0.204±0.00 0.144±0.00 0.297±0.00 N/A 0.486±0.00 0.090±0.04 N/A 0.470±0.05 0.345±0.00
ENST00000465518 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.405±0.00
ENSG00000229388 ENST00000420776 0.087±0.00 0.329±0.00 0.180±0.00 1.074±0.00 0.697±0.32 0.352±0.03 0.426±0.00 0.062±0.00 0.647±0.00 0.499±0.00 1.270±0.00 0.329±0.09 0.171±0.02 0.318±0.08
ENST00000427804 0.022±0.00 0.543±0.00 N/A 0.223±0.06 0.236±0.00 0.134±0.00 0.261±0.03 N/A N/A 0.090±0.00 N/A 0.065±0.01 N/A 0.147±0.00
ENSG00000252777 ENST00000516968 N/A N/A N/A N/A 0.182±0.00 N/A 0.280±0.00 N/A N/A N/A N/A N/A N/A 0.408±0.00
ENSG00000270103 ENST00000602813 0.404±0.00 0.851±0.00 310.169±0.00 351.830±351.16 485.481±484.40 847.250±0.00 225.324±223.53 182.808±182.58 1407.020±0.00 863.213±0.00 142.582±139.25 1238.316±1213.63 14.321±13.06 2.943±2.75
ENSG00000274978 ENST00000387069 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 10.618±0.00 N/A N/A

Loading