C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003PX_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000034215-ENSDARG00000062060 CGP 7955 19:15464417-15521221
GeneTranscriptPositionBiotype
ENSDARG00000034215 (rab42a)
RAB42, member RAS oncogene family a 		ENSDART00000046530 (rab42a-001) 15464417-15468181 protein_coding
ENSDARG00000062060 (gmeb1)
glucocorticoid modulatory element binding protein 1 		ENSDART00000103767 (gmeb1-201) 15502438-15519691 protein_coding
ENSDART00000138709 (gmeb1-001) 15500479-15518725 protein_coding
ENSDART00000144376 (gmeb1-002) 15496497-15516135 nonsense_mediated_decay
ENSDART00000151169 (gmeb1-004) 15496473-15521221 protein_coding
CIL_0003PX_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000188060-ENSG00000162419 CGP 9606 1:28592200-28719353
GeneTranscriptPositionBiotype
ENSG00000120656 (TAF12)
TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 20kDa 		ENST00000263974 (TAF12-001) 28603101-28643005 protein_coding
ENST00000373824 (TAF12-002) 28602850-28643066 protein_coding
ENST00000471683 (TAF12-003) 28589323-28618030 processed_transcript
ENST00000495422 (TAF12-004) 28613247-28643085 processed_transcript
ENSG00000162419 (GMEB1)
glucocorticoid modulatory element binding protein 1 		ENST00000294409 (GMEB1-003) 28668780-28714873 protein_coding
ENST00000361872 (GMEB1-002) 28668778-28714886 protein_coding
ENST00000373816 (GMEB1-001) 28668732-28719353 protein_coding
ENST00000480454 (GMEB1-005) 28683564-28715065 processed_transcript
ENSG00000188060 (RAB42)
RAB42, member RAS oncogene family 		ENST00000373826 (RAB42-001) 28592200-28595443 protein_coding
ENST00000465518 (RAB42-002) 28592515-28594300 processed_transcript
ENSG00000229388 (RP11-442N24__B.1)
 ENST00000420776 (RP11-442N24__B.1-001) 28643228-28648530 lincRNA
ENST00000427804 (RP11-442N24__B.1-002) 28646091-28648581 lincRNA
ENSG00000252777 (SCARNA24)
Small Cajal body specific RNA 24 		ENST00000516968 (SCARNA24.1-202) 28689665-28689794 snoRNA
ENSG00000270103 (RNU11)
RNA, U11 small nuclear 		ENST00000602813 (RNU11-001) 28648600-28648730 lincRNA
ENSG00000274978 (U11)
U11 spliceosomal RNA 		ENST00000387069 (U11.1-201) 28648600-28648733 snRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003PX_0001ENSDARG00000034215ENSDART00000046530ENSDARG00000062060ENSDART00000103767ENSDART00000138709ENSDART00000144376ENSDART00000151169CIL_0003PX_0002ENSG00000120656ENST00000263974ENST00000373824ENST00000471683ENST00000495422ENSG00000162419ENST00000294409ENST00000361872ENST00000373816ENST00000480454ENSG00000188060ENST00000373826ENST00000465518ENSG00000229388ENST00000420776ENST00000427804ENSG00000252777ENST00000516968ENSG00000270103ENST00000602813ENSG00000274978ENST00000387069
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003PX_0001ENSDARG00000034215ENSDART00000046530ENSDARG00000062060ENSDART00000103767ENSDART00000138709ENSDART00000151169CIL_0003PX_0002ENSG00000120656ENST00000263974ENST00000373824ENST00000471683ENST00000495422ENSG00000162419ENST00000294409ENST00000361872ENST00000373816ENST00000480454ENSG00000188060ENST00000373826ENST00000465518ENSG00000229388ENST00000420776ENST00000427804ENSG00000252777ENST00000516968ENSG00000270103ENST00000602813ENSG00000274978ENST00000387069
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000034215 ENSDART00000046530 N/A N/A N/A 15.026±0.00 N/A N/A N/A 0.067±0.00 N/A N/A 0.816±0.00 N/A N/A N/A
ENSDARG00000062060 ENSDART00000103767 N/A N/A N/A 8.298±2.86 N/A N/A 4.468±1.15 2.591±0.75 1.179±0.00 N/A 1.769±0.00 N/A N/A N/A
ENSDART00000138709 N/A N/A N/A 2.008±0.92 N/A N/A 1.671±0.20 N/A N/A N/A 0.579±0.00 N/A N/A N/A
ENSDART00000144376 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000151169 N/A N/A N/A 2.138±0.60 N/A N/A 1.338±0.87 1.138±0.00 0.370±0.00 N/A 0.247±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000120656 ENST00000263974 6.194±0.00 4.885±0.00 N/A 1.421±1.10 7.974±0.00 8.862±0.00 6.393±0.00 8.892±0.00 4.933±0.00 5.573±0.00 10.218±0.00 7.640±2.60 6.937±1.09 14.734±0.00
ENST00000373824 5.855±0.00 2.714±0.00 1.746±0.00 2.498±0.22 2.545±0.16 1.974±0.38 0.778±0.00 3.019±0.00 1.642±0.55 2.178±1.21 N/A 5.394±2.41 8.631±6.57 7.842±2.58
ENST00000471683 N/A N/A N/A N/A N/A N/A N/A 3.881±0.00 N/A N/A N/A N/A N/A N/A
ENST00000495422 N/A N/A N/A 1.621±0.00 N/A 4.268±0.00 2.903±0.85 N/A N/A 2.364±0.00 N/A N/A 17.504±0.00 N/A
ENSG00000162419 ENST00000294409 2.792±0.00 N/A N/A 0.514±0.00 1.500±0.00 1.242±0.20 0.250±0.00 N/A 1.144±0.00 1.392±0.00 1.104±0.95 1.826±0.78 1.263±0.00 4.283±0.00
ENST00000361872 N/A 1.984±0.00 1.062±0.00 1.357±0.00 N/A 0.519±0.00 0.966±0.00 1.115±0.00 1.643±0.00 1.838±0.10 0.909±0.00 2.775±1.93 3.327±1.86 4.840±1.26
ENST00000373816 0.378±0.00 1.363±0.00 N/A 0.566±0.10 1.506±0.00 N/A 0.871±0.00 0.979±0.85 0.672±0.20 0.568±0.08 1.194±1.16 2.035±1.20 1.102±0.03 1.584±0.07
ENST00000480454 N/A N/A 0.282±0.00 1.382±0.00 0.975±0.00 0.505±0.00 0.697±0.00 N/A N/A N/A N/A 3.093±0.00 N/A N/A
ENSG00000188060 ENST00000373826 N/A 1.173±0.00 N/A 0.214±0.17 N/A 0.204±0.00 0.144±0.00 0.297±0.00 N/A 0.486±0.00 0.090±0.04 N/A 0.470±0.05 0.345±0.00
ENST00000465518 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.405±0.00
ENSG00000229388 ENST00000420776 0.087±0.00 0.329±0.00 0.180±0.00 1.074±0.00 0.697±0.32 0.352±0.03 0.426±0.00 0.062±0.00 0.647±0.00 0.499±0.00 1.270±0.00 0.329±0.09 0.171±0.02 0.318±0.08
ENST00000427804 0.022±0.00 0.543±0.00 N/A 0.223±0.06 0.236±0.00 0.134±0.00 0.261±0.03 N/A N/A 0.090±0.00 N/A 0.065±0.01 N/A 0.147±0.00
ENSG00000252777 ENST00000516968 N/A N/A N/A N/A 0.182±0.00 N/A 0.280±0.00 N/A N/A N/A N/A N/A N/A 0.408±0.00
ENSG00000270103 ENST00000602813 0.404±0.00 0.851±0.00 310.169±0.00 351.830±351.16 485.481±484.40 847.250±0.00 225.324±223.53 182.808±182.58 1407.020±0.00 863.213±0.00 142.582±139.25 1238.316±1213.63 14.321±13.06 2.943±2.75
ENSG00000274978 ENST00000387069 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 10.618±0.00 N/A N/A

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