C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: patched domain containing 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000294484 PTCHD2-001 ENSG00000204624 9606 + 1:11479238-11537584 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastHeartKidneyLungOvaryTestisENST00000294484
Transcript ID Adipose Adrenal Brain Breast Heart Kidney Lung Ovary Testis
ENST00000294484 0.011±0.00 0.105±0.00 1.572±0.00 0.020±0.01 0.031±0.01 0.006±0.00 0.024±0.00 0.076±0.01 1.183±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005783 ISS endoplasmic reticulum
GO:0007224 NAS smoothened signaling pathway
GO:0008158 IEA hedgehog receptor activity
GO:0016020 IEA membrane
GO:0016021 NAS:IEA integral component of membrane
GO:0031965 ISS nuclear membrane
GO:0032368 NAS regulation of lipid transport
GO:0042632 ISS cholesterol homeostasis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000047720 Ptchd2-001 protein_coding Mus_musculus 0 4048
ENSMUST00000143851 Ptchd2-003 retained_intron Mus_musculus 0 612
ENSMUST00000129734 Ptchd2-002 processed_transcript Mus_musculus 0 523

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