C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: glucosamine-6-phosphate deaminase 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000295448 GNPDA2-001 ENSG00000163281 9606 - 4:44702139-44726595 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000295448
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000295448 2.236±0.00 2.054±0.00 3.062±0.00 6.083±0.00 3.066±1.09 5.219±0.00 2.215±0.00 1.273±0.00 5.348±0.00 3.130±2.39 2.875±0.55 0.911±0.00 3.591±0.13

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002YZ CIL_0002YZ_0001 CGP 4:44622065-44700926
CIL_0005LN CIL_0005LN_0002 CGP 4:44678427-44726595
CIL_0002YW CIL_0002YW_0001 CGP 4:44682200-46124081

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004342 IEA glucosamine-6-phosphate deaminase activity
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0005975 IEA carbohydrate metabolic process
GO:0006044 IEA N-acetylglucosamine metabolic process
GO:0016787 IEA hydrolase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000031117 Gnpda2-001 protein_coding Mus_musculus 0 1086
ENSMUST00000139632 Gnpda2-003 nonsense_mediated_decay Mus_musculus 0 1086
ENSMUST00000166298 Gnpda2-201 protein_coding Mus_musculus 0 1053
ENSMUST00000173927 Gnpda2-009 protein_coding Mus_musculus 0 1053
ENSMUST00000120789 Gnpda2-002 protein_coding Mus_musculus 0 996
ENSMUST00000174233 Gnpda2-008 protein_coding Mus_musculus 0 664
ENSMUST00000154018 Gnpda2-004 retained_intron Mus_musculus 0 514
ENSMUST00000145775 Gnpda2-005 processed_transcript Mus_musculus 0 486
ENSMUST00000144203 Gnpda2-006 processed_transcript Mus_musculus 0 252
ENSMUST00000153536 Gnpda2-007 nonsense_mediated_decay Mus_musculus 4e-39 167
ENSMUST00000125660 Guf1-007 retained_intron Mus_musculus 3e-20 104

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