C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: histone deacetylase 11
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000295757 HDAC11-001 ENSG00000163517 9606 + 3:13480165-13506416 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; HeartTestisENST00000295757
Transcript ID Heart Testis
ENST00000295757 2.593±0.00 4.628±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000518 CIL_000518_0001 CGP 3:13316235-13506424
CIL_0004U8 CIL_0004U8_0002 CGP 3:13479724-13638422

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000118 IDA histone deacetylase complex
GO:0004407 IDA histone deacetylase activity
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005886 IDA plasma membrane
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008134 TAS transcription factor binding
GO:0008152 IEA metabolic process
GO:0014003 IEA oligodendrocyte development
GO:0016568 TAS chromatin modification
GO:0016575 IDA histone deacetylation
GO:0016787 IEA hydrolase activity
GO:0032041 IEA NAD-dependent histone deacetylase activity (H3-K14 specific)
GO:0046969 IEA NAD-dependent histone deacetylase activity (H3-K9 specific)
GO:0046970 IEA NAD-dependent histone deacetylase activity (H4-K16 specific)
GO:0070062 IDA extracellular vesicular exosome
GO:0070932 IEA histone H3 deacetylation
GO:0070933 IEA histone H4 deacetylation
GO:0097372 IEA NAD-dependent histone deacetylase activity (H3-K18 specific)

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000041736 Hdac11-001 protein_coding Mus_musculus 0 1230
ENSMUST00000155007 Hdac11-002 protein_coding Mus_musculus 0 667
ENSMUST00000127768 Hdac11-004 retained_intron Mus_musculus 0 606
ENSMUST00000143621 Hdac11-005 protein_coding Mus_musculus 0 558
ENSMUST00000134154 Hdac11-006 retained_intron Mus_musculus 0 366
ENSMUST00000154389 Hdac11-003 retained_intron Mus_musculus 0 350

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