C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: pentraxin 3, long
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000295927 PTX3-001 ENSG00000163661 9606 + 3:157436789-157443628 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000295927
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000295927 80.792±0.00 2.910±0.00 0.391±0.30 1.700±0.98 18.354±17.79 0.837±0.75 4.211±0.00 2.658±2.08 15.957±0.00 0.417±0.00 0.950±1.09 4.789±3.23 1.046±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00028W CIL_00028W_0001 CGP 3:157146508-157533619
CIL_0004JX CIL_0004JX_0002 CGP 3:157259742-157533619

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001849 IDA complement component C1q binding
GO:0001872 IEA (1->3)-beta-D-glucan binding
GO:0001878 IEA response to yeast
GO:0005576 TAS extracellular region
GO:0005615 IDA extracellular space
GO:0006954 TAS inflammatory response
GO:0008228 IEA opsonization
GO:0044869 IDA negative regulation by host of viral exo-alpha-sialidase activity
GO:0044871 IDA negative regulation by host of viral glycoprotein metabolic process
GO:0045087 IDA innate immune response
GO:0045429 IEA positive regulation of nitric oxide biosynthetic process
GO:0046597 IDA negative regulation of viral entry into host cell
GO:0046790 IDA virion binding
GO:0050766 IEA positive regulation of phagocytosis
GO:1903016 IDA negative regulation of exo-alpha-sialidase activity
GO:1903019 IDA negative regulation of glycoprotein metabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000029421 Ptx3-001 protein_coding Mus_musculus 0 1535

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