C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RFT1 homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000296292 RFT1-001 ENSG00000163933 9606 - 3:53088483-53130462 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaENST00000296292
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta
ENST00000296292 0.969±0.00 0.873±0.00 0.597±0.00 1.604±0.48 1.116±0.27 0.829±0.00 0.560±0.10 1.649±0.00 1.033±0.03 0.712±0.16 1.508±0.73 0.992±0.16

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005319 IEA lipid transporter activity
GO:0006488 TAS dolichol-linked oligosaccharide biosynthetic process
GO:0006869 IEA lipid transport
GO:0008643 IEA carbohydrate transport
GO:0016021 IEA integral component of membrane
GO:0018279 TAS protein N-linked glycosylation via asparagine
GO:0043687 TAS post-translational protein modification
GO:0044267 TAS cellular protein metabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000064230 Rft1-001 protein_coding Mus_musculus 0 1698
ENSMUST00000131097 Rft1-003 nonsense_mediated_decay Mus_musculus 0 1670
ENSMUST00000155689 Rft1-007 nonsense_mediated_decay Mus_musculus 0 1205
ENSMUST00000143923 Rft1-005 processed_transcript Mus_musculus 0 628
ENSMUST00000143534 Rft1-002 retained_intron Mus_musculus 0 628
ENSDART00000085061 rft1-001 protein_coding Danio_rerio 0 268
ENSMUST00000133573 Rft1-004 processed_transcript Mus_musculus 0 200
ENSMUST00000074912 2010012O05Rik-201 protein_coding Mus_musculus 0.0000006 62

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