C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nucleolar protein 6 (RNA-associated)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000297990 NOL6-004 ENSG00000165271 9606 - 9:33461452-33473930 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000297990
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000297990 6.061±0.00 5.364±0.00 0.236±0.00 3.250±2.52 3.221±1.39 1.520±0.57 1.840±1.34 2.678±2.42 2.930±1.72 3.603±0.00 5.614±5.45 6.932±4.86 5.351±1.73 5.519±0.30

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006AT CIL_0006AT_0001 CGP 9:33441154-33473930

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000794 ISS condensed nuclear chromosome
GO:0003723 ISS RNA binding
GO:0005634 IDA nucleus
GO:0005730 ISS nucleolus
GO:0005739 IDA mitochondrion
GO:0006364 ISS rRNA processing
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000030138 Nol6-001 protein_coding Mus_musculus 0 3559
ENSMUST00000129112 Nol6-002 processed_transcript Mus_musculus 0 593
ENSMUST00000155315 Nol6-003 processed_transcript Mus_musculus 0 442
ENSMUST00000135059 Nol6-004 processed_transcript Mus_musculus 0 337

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