C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protein kinase C and casein kinase substrate in neurons 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000298838 PACSIN3-002 ENSG00000165912 9606 - 11:47177525-47186407 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000298838
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000298838 11.665±0.00 0.922±0.00 7.614±5.57 14.684±0.00 30.555±0.00 27.352±24.89 5.975±3.40 9.494±8.75 6.891±5.71 134.686±106.36 20.430±8.55 24.110±7.03 7.511±6.80

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI:IEA protein binding
GO:0005737 ISS cytoplasm
GO:0005886 IEA plasma membrane
GO:0006897 IEA endocytosis
GO:0008092 ISS cytoskeletal protein binding
GO:0008289 IDA lipid binding
GO:0019855 ISS calcium channel inhibitor activity
GO:0045806 ISS negative regulation of endocytosis
GO:0051044 IMP positive regulation of membrane protein ectodomain proteolysis
GO:0051926 ISS negative regulation of calcium ion transport
GO:0070062 IDA extracellular vesicular exosome
GO:0097320 IEA:IDA membrane tubulation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000028694 Pacsin3-004 protein_coding Mus_musculus 0 1637
ENSMUST00000168916 Pacsin3-201 protein_coding Mus_musculus 0 1628
ENSMUST00000111349 Pacsin3-001 protein_coding Mus_musculus 0 1605
ENSMUST00000059566 Pacsin3-002 protein_coding Mus_musculus 0 1557
ENSMUST00000138470 Pacsin3-014 protein_coding Mus_musculus 0 723
ENSMUST00000134699 Pacsin3-008 protein_coding Mus_musculus 0 688
ENSMUST00000131711 Pacsin3-006 protein_coding Mus_musculus 0 490
ENSMUST00000156919 Pacsin3-005 protein_coding Mus_musculus 0 455
ENSMUST00000128684 Pacsin3-012 protein_coding Mus_musculus 0 407
ENSMUST00000144394 Pacsin3-003 protein_coding Mus_musculus 0 398
ENSMUST00000154959 Pacsin3-013 protein_coding Mus_musculus 0 329
ENSMUST00000141313 Pacsin3-011 retained_intron Mus_musculus 0 327
ENSDART00000092415 pacsin2-201 protein_coding Danio_rerio 2e-18 99
ENSDART00000149636 pacsin2-003 protein_coding Danio_rerio 2e-18 99
ENSDART00000148728 pacsin2-001 protein_coding Danio_rerio 2e-18 99

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