C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: telomeric repeat binding factor 2, interacting protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000300086 TERF2IP-001 ENSG00000166848 9606 + 16:75647786-75657432 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000300086
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000300086 36.118±0.00 36.238±0.00 3.761±0.00 79.521±43.68 18.889±10.90 44.330±0.00 13.743±9.65 18.771±13.88 11.416±2.76 26.023±18.39 11.785±8.40 24.315±17.29 18.977±1.87 48.587±9.34

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002D7 CIL_0002D7_0001 CGP 16:75596981-75648643
CIL_0003YT CIL_0003YT_0001 CGP 16:75627474-75761872

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000228 TAS nuclear chromosome
GO:0000723 IDA telomere maintenance
GO:0000781 ISS chromosome, telomeric region
GO:0000783 IDA nuclear telomere cap complex
GO:0000784 IDA nuclear chromosome, telomeric region
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005634 ISS nucleus
GO:0005635 IEA nuclear envelope
GO:0005654 TAS nucleoplasm
GO:0005737 ISS cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 ISS regulation of transcription, DNA-templated
GO:0007004 TAS telomere maintenance via telomerase
GO:0010569 ISS regulation of double-strand break repair via homologous recombination
GO:0010833 ISS telomere maintenance via telomere lengthening
GO:0030870 IDA Mre11 complex
GO:0031848 IMP protection from non-homologous end joining at telomere
GO:0032205 IMP negative regulation of telomere maintenance
GO:0043123 ISS positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0048239 ISS negative regulation of DNA recombination at telomere
GO:0051092 ISS positive regulation of NF-kappaB transcription factor activity
GO:0070198 IMP protein localization to chromosome, telomeric region

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000052138 Terf2ip-201 protein_coding Mus_musculus 0 1240

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