C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003YT_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000065427-ENSG00000166848 CGP 9606 16:75627474-75761872
GeneTranscriptPositionBiotype
ENSG00000065427 (KARS)
lysyl-tRNA synthetase 		ENST00000302445 (KARS-001) 75627724-75647679 protein_coding
ENST00000319410 (KARS-002) 75627474-75647665 protein_coding
ENST00000562875 (KARS-006) 75631722-75647651 nonsense_mediated_decay
ENST00000564578 (KARS-004) 75627770-75647648 nonsense_mediated_decay
ENST00000565738 (KARS-010) 75639782-75641602 retained_intron
ENST00000566249 (KARS-008) 75634241-75647607 nonsense_mediated_decay
ENST00000566560 (KARS-003) 75633971-75648643 retained_intron
ENST00000566772 (KARS-011) 75635324-75636073 protein_coding
ENST00000568378 (KARS-009) 75627758-75647624 protein_coding
ENST00000568682 (KARS-007) 75635699-75647650 protein_coding
ENST00000569298 (KARS-013) 75627846-75629009 retained_intron
ENST00000570215 (KARS-012) 75635791-75647655 protein_coding
ENSG00000166848 (TERF2IP)
telomeric repeat binding factor 2, interacting protein 		ENST00000300086 (TERF2IP-001) 75647786-75657432 protein_coding
ENST00000564671 (TERF2IP-003) 75656207-75761872 protein_coding
ENST00000569234 (TERF2IP-002) 75648396-75656433 nonsense_mediated_decay
ENSG00000240199 (RN7SL520P)
RNA, 7SL, cytoplasmic 520, pseudogene 		ENST00000474110 (RN7SL520P-201) 75698531-75698816 misc_RNA
ENSG00000261424 (ATP5F1P7)
ATP synthase, H+ transporting, mitochondrial Fo complex, subunit B1 pseudogene 7 		ENST00000567330 (ATP5F1P7-001) 75709056-75709815 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_0003YT_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000031948-ENSMUSG00000033430 CGP 10090 8:111993440-112020528
GeneTranscriptPositionBiotype
ENSMUSG00000031948 (Kars)
lysyl-tRNA synthetase 		ENSMUST00000034426 (Kars-201) 111993444-112011323 protein_coding
ENSMUST00000093120 (Kars-202) 111993440-112011288 protein_coding
ENSMUST00000164470 (Kars-203) 111993444-112011266 protein_coding
ENSMUSG00000033430 (Terf2ip)
telomeric repeat binding factor 2, interacting protein 		ENSMUST00000052138 (Terf2ip-201) 112011359-112020528 protein_coding
ENSMUSG00000092086 (Gm6793)
predicted gene 6793 		ENSMUST00000071732 (Gm6793-201) 112013433-112015036 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003YT_0001ENSG00000065427ENST00000302445ENST00000319410ENST00000562875ENST00000564578ENST00000565738ENST00000566249ENST00000566560ENST00000566772ENST00000568378ENST00000568682ENST00000569298ENST00000570215ENSG00000166848ENST00000300086ENST00000564671ENST00000569234ENSG00000240199ENST00000474110ENSG00000261424ENST00000567330CIL_0003YT_0002ENSMUSG00000031948ENSMUST00000034426ENSMUST00000093120ENSMUST00000164470ENSMUSG00000033430ENSMUST00000052138ENSMUSG00000092086ENSMUST00000071732
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003YT_0001ENSG00000065427ENST00000302445ENST00000319410ENST00000564578ENSG00000166848ENST00000300086ENSG00000240199ENST00000474110ENSG00000261424ENST00000567330CIL_0003YT_0002ENSMUSG00000031948ENSMUST00000034426ENSMUST00000093120ENSMUST00000164470ENSMUSG00000033430ENSMUST00000052138ENSMUSG00000092086ENSMUST00000071732
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000065427 ENST00000302445 51.270±0.00 58.730±0.00 5.968±0.00 19.819±8.54 27.903±12.36 38.049±21.28 23.589±14.95 24.395±15.33 19.192±5.89 27.380±16.11 75.719±59.18 30.418±20.26 40.819±14.90 61.579±26.55
ENST00000319410 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.561±0.00 N/A N/A
ENST00000562875 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000564578 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.991±0.00 8.981±0.00 17.566±0.00
ENST00000565738 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000566249 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000566560 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000566772 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000568378 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000568682 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000569298 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000570215 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000166848 ENST00000300086 36.118±0.00 36.238±0.00 3.761±0.00 79.521±43.68 18.889±10.90 44.330±0.00 13.743±9.65 18.771±13.88 11.416±2.76 26.023±18.39 11.785±8.40 24.315±17.29 18.977±1.87 48.587±9.34
ENST00000564671 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000569234 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000240199 ENST00000474110 N/A 0.260±0.00 N/A 0.071±0.00 N/A N/A N/A N/A N/A 0.065±0.00 N/A N/A N/A N/A
ENSG00000261424 ENST00000567330 N/A N/A N/A 0.050±0.00 N/A N/A 0.015±0.00 N/A 0.725±0.00 N/A 0.242±0.23 0.071±0.00 N/A 0.152±0.06
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000031948 ENSMUST00000034426 18.961±0.95 10.454±1.08 24.606±1.92 23.275±9.55 17.113±3.81 23.552±3.97 17.532±0.93 20.951±1.73 25.678±13.67 17.365±1.74 23.885±1.63 33.587±6.05 37.693±24.41 28.188±6.00
ENSMUST00000093120 14.049±6.26 4.598±1.15 6.430±1.07 10.736±1.15 5.449±1.04 6.455±1.17 5.664±1.22 5.452±1.08 5.704±1.73 3.018±0.37 10.735±1.99 7.494±3.68 11.274±9.95 3.396±0.45
ENSMUST00000164470 N/A 3.267±0.29 N/A N/A 4.214±0.00 4.484±0.00 N/A N/A N/A 2.210±0.00 3.635±0.00 N/A N/A N/A
ENSMUSG00000033430 ENSMUST00000052138 2.984±0.37 9.143±3.24 6.226±0.05 13.417±2.37 3.033±1.78 3.440±2.03 2.645±0.22 4.915±0.83 3.132±0.51 5.667±1.44 3.395±0.21 8.929±1.65 4.722±0.81 1.416±0.26
ENSMUSG00000092086 ENSMUST00000071732 0.354±0.06 0.460±0.18 0.206±0.02 0.431±0.29 0.285±0.11 0.283±0.17 0.185±0.16 0.318±0.16 0.222±0.11 0.503±0.09 0.079±0.02 0.666±0.52 0.179±0.12 0.205±0.16

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