C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: peroxiredoxin 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000301522 PRDX2-001 ENSG00000167815 9606 - 19:12796820-12801859 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000301522
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000301522 63.430±0.00 73.018±0.00 7.508±0.00 104.208±61.16 98.568±91.36 44.170±38.42 122.291±98.06 81.001±63.48 62.045±53.39 45.141±41.04 78.934±45.88 113.300±68.81 110.078±39.93 46.068±37.20

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007VV CIL_0007VV_0001 VISTA 19:12752697-13356541
CIL_00016T CIL_00016T_0002 CGP 19:12763003-12872740
CIL_0007ZV CIL_0007ZV_0001 VISTA 19:12767682-13372012

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005737 TAS cytoplasm
GO:0005829 TAS cytosol
GO:0006979 NAS response to oxidative stress
GO:0008379 TAS thioredoxin peroxidase activity
GO:0016209 NAS:IEA antioxidant activity
GO:0016491 IEA oxidoreductase activity
GO:0019430 IDA removal of superoxide radicals
GO:0034599 IDA cellular response to oxidative stress
GO:0042744 TAS hydrogen peroxide catabolic process
GO:0042981 IMP regulation of apoptotic process
GO:0043066 TAS negative regulation of apoptotic process
GO:0043524 IEA negative regulation of neuron apoptotic process
GO:0051920 IEA peroxiredoxin activity
GO:0055114 IEA oxidation-reduction process
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000109734 Prdx2-003 protein_coding Mus_musculus 0 728
ENSMUST00000005292 Prdx2-001 protein_coding Mus_musculus 0 723
ENSMUST00000164807 Prdx2-201 protein_coding Mus_musculus 0 719
ENSMUST00000109733 Prdx2-005 protein_coding Mus_musculus 0 719
ENSMUST00000143402 Prdx2-002 retained_intron Mus_musculus 0 616
ENSMUST00000125893 Prdx2-006 protein_coding Mus_musculus 0 540
ENSMUST00000117259 Prdx2-rs3-001 processed_pseudogene Mus_musculus 0 433
ENSMUST00000138748 Prdx2-004 retained_intron Mus_musculus 0 315

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