C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: peroxiredoxin 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000005292 Prdx2-001 ENSMUSG00000005161 10090 + 8:84969611-84974834 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000005292
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000005292 98.489±17.95 114.048±23.77 116.718±0.00 231.770±4.04 67.238±25.23 85.323±10.44 125.653±26.61 113.160±17.34 160.406±188.84 64.144±7.19 34.022±11.78 126.054±50.81 42.514±46.23

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ZV CIL_0007ZV_0002 VISTA 8:84428902-85032705
CIL_0007VV CIL_0007VV_0002 VISTA 8:84441926-85045230
CIL_00063Y CIL_00063Y_0002 CGP 8:84956610-84974834
CIL_000640 CIL_000640_0002 CGP 8:84969587-84978748

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000187 IMP activation of MAPK activity
GO:0002536 IMP respiratory burst involved in inflammatory response
GO:0004601 TAS peroxidase activity
GO:0005515 IPI protein binding
GO:0005739 IDA mitochondrion
GO:0006979 TAS response to oxidative stress
GO:0008379 ISS thioredoxin peroxidase activity
GO:0008430 TAS selenium binding
GO:0010310 IMP regulation of hydrogen peroxide metabolic process
GO:0019430 IMP removal of superoxide radicals
GO:0030194 IMP positive regulation of blood coagulation
GO:0031665 IMP negative regulation of lipopolysaccharide-mediated signaling pathway
GO:0032088 IMP negative regulation of NF-kappaB transcription factor activity
GO:0032496 IMP response to lipopolysaccharide
GO:0042098 IMP T cell proliferation
GO:0042743 IMP hydrogen peroxide metabolic process
GO:0042744 IMP hydrogen peroxide catabolic process
GO:0045581 IMP negative regulation of T cell differentiation
GO:0048538 IMP thymus development
GO:0048872 IMP homeostasis of number of cells
GO:0055114 IEA oxidation-reduction process
GO:2000378 IMP negative regulation of reactive oxygen species metabolic process
GO:2001237 IMP negative regulation of extrinsic apoptotic signaling pathway
GO:2001240 IDA negative regulation of extrinsic apoptotic signaling pathway in absence of ligand

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000301522 PRDX2-001 protein_coding Homo_sapiens 0 723
ENST00000334482 PRDX2-002 protein_coding Homo_sapiens 0 457
ENST00000450181 PRDX2P1-001 processed_pseudogene Homo_sapiens 0 507
ENST00000466174 PRDX2-006 retained_intron Homo_sapiens 0 315
ENST00000477555 PRDX2-003 retained_intron Homo_sapiens 0 459

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