C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: scavenger receptor class A, member 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000301904 SCARA3-001 ENSG00000168077 9606 + 8:27634181-27673020 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000301904
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000301904 6.374±0.00 15.239±0.00 0.925±0.00 10.965±6.97 4.483±3.23 5.417±4.64 1.264±0.73 2.394±2.18 2.258±1.83 7.392±5.98 0.545±0.42 9.240±10.22 25.626±4.63 5.893±4.11

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009DK CIL_0009DK_0001 VISTA 8:27594923-28195834
CIL_0005SQ CIL_0005SQ_0002 CGP 8:27596917-27676776

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005044 TAS scavenger receptor activity
GO:0005581 IEA collagen trimer
GO:0005783 IEA endoplasmic reticulum
GO:0005794 IEA Golgi apparatus
GO:0006898 TAS receptor-mediated endocytosis
GO:0006979 TAS response to oxidative stress
GO:0009650 TAS UV protection
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000042046 Scara3-201 protein_coding Mus_musculus 0 2045

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