C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S9
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000302907 RPS9-003 ENSG00000170889 9606 + 19:54200742-54207647 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000302907
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000302907 124.395±0.00 115.637±0.00 35.165±0.00 62.662±4.83 96.397±5.52 180.121±97.36 31.389±0.00 75.607±16.63 60.708±0.00 99.812±0.00 16.752±0.00 116.671±36.02 116.101±0.00 128.086±75.82

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005M6 CIL_0005M6_0001 CGP 19:54189938-54249003

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003723 IEA RNA binding
GO:0003735 IEA structural constituent of ribosome
GO:0005515 IPI protein binding
GO:0005622 IEA intracellular
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0005840 NAS ribosome
GO:0005925 IDA focal adhesion
GO:0006412 IC:IEA translation
GO:0006413 TAS translational initiation
GO:0006414 TAS translational elongation
GO:0006415 TAS translational termination
GO:0006417 IMP regulation of translation
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0008284 IMP positive regulation of cell proliferation
GO:0010467 TAS gene expression
GO:0015935 IEA small ribosomal subunit
GO:0016020 IDA membrane
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0019843 IEA rRNA binding
GO:0022627 IDA cytosolic small ribosomal subunit
GO:0030529 IDA ribonucleoprotein complex
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding
GO:0045182 IMP translation regulator activity
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000006496 Rps9-001 protein_coding Mus_musculus 0 712
ENSMUST00000108625 Rps9-008 protein_coding Mus_musculus 0 710
ENSMUST00000126562 Rps9-004 protein_coding Mus_musculus 0 499
ENSMUST00000108623 Rps9-002 protein_coding Mus_musculus 0 499
ENSMUST00000146927 Rps9-009 nonsense_mediated_decay Mus_musculus 0 481
ENSMUST00000120147 Gm14034-001 processed_pseudogene Mus_musculus 0 396
ENSMUST00000136858 Rps9-010 retained_intron Mus_musculus 0 222
ENSMUST00000108624 Rps9-003 protein_coding Mus_musculus 0 217

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