C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ribosomal protein S9
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000170889 RPS9 9606 + 19:54200742-54249003 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000302907 RPS9-003 54200742-54207647 protein_coding
  ENST00000391751 RPS9-012 54200874-54207647 protein_coding
  ENST00000391752 RPS9-001 54200872-54207647 protein_coding
  ENST00000391753 RPS9-010 54201133-54207647 protein_coding
  ENST00000402367 RPS9-006 54200872-54207647 protein_coding
  ENST00000436445 RPS9-009 54200871-54207522 nonsense_mediated_decay
  ENST00000441429 RPS9-004 54201160-54207630 protein_coding
  ENST00000445961 RPS9-007 54200872-54207647 nonsense_mediated_decay
  ENST00000448962 RPS9-002 54200858-54249003 nonsense_mediated_decay
  ENST00000460761 RPS9-011 54201160-54202008 retained_intron
  ENST00000484121 RPS9-008 54200809-54206847 retained_intron
  ENST00000495002 RPS9-005 54200879-54207644 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000302907ENST00000391752ENST00000391753ENST00000436445
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000302907 124.395±0.00 115.637±0.00 35.165±0.00 62.662±4.83 96.397±5.52 180.121±97.36 31.389±0.00 75.607±16.63 60.708±0.00 99.812±0.00 16.752±0.00 116.671±36.02 116.101±0.00 128.086±75.82
ENST00000391752 219.128±0.00 104.168±0.00 N/A 24.178±0.00 138.170±0.00 177.818±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000391753 452.399±0.00 640.926±0.00 N/A 105.130±0.00 417.989±0.00 394.149±0.00 191.043±0.00 244.337±0.00 286.814±0.00 911.564±0.00 209.902±181.64 1244.438±972.44 785.662±428.73 254.482±208.84
ENST00000436445 N/A N/A N/A 26.248±0.00 N/A N/A N/A N/A N/A 166.234±0.00 N/A 107.203±0.00 N/A 57.113±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005M6 CIL_0005M6_0001 CGP 19:54189938-54249003

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003723 IEA RNA binding
GO:0003735 IEA structural constituent of ribosome
GO:0005515 IPI protein binding
GO:0005622 IEA intracellular
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0005840 NAS ribosome
GO:0005925 IDA focal adhesion
GO:0006412 IC:IEA translation
GO:0006413 TAS translational initiation
GO:0006414 TAS translational elongation
GO:0006415 TAS translational termination
GO:0006417 IMP regulation of translation
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0008284 IMP positive regulation of cell proliferation
GO:0010467 TAS gene expression
GO:0015935 IEA small ribosomal subunit
GO:0016020 IDA membrane
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0019843 IEA rRNA binding
GO:0022627 IDA cytosolic small ribosomal subunit
GO:0030529 IDA ribonucleoprotein complex
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding
GO:0045182 IMP translation regulator activity
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000011405 rps9 ribosomal protein S9 protein_coding Danio_rerio
ENSMUSG00000006333 Rps9 ribosomal protein S9 protein_coding Mus_musculus

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