C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: methyl CpG binding protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000303391 MECP2-001 ENSG00000169057 9606 - X:154021573-154097755 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENST00000303391
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENST00000303391 1.882±0.00 2.826±0.00 2.914±1.38 0.978±0.00 0.677±0.37 0.777±0.00 0.717±0.00 0.477±0.00 0.428±0.00 4.521±2.81 0.332±0.00 2.632±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007GC CIL_0007GC_0002 CGP X:154010500-154097755
CIL_0001LD CIL_0001LD_0001 CGP X:154021573-154159032

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 TAS negative regulation of transcription from RNA polymerase II promoter
GO:0000792 IDA heterochromatin
GO:0003677 TAS:IEA DNA binding
GO:0003714 TAS transcription corepressor activity
GO:0005515 IPI protein binding
GO:0005615 IDA extracellular space
GO:0005634 IDA:IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0010385 IMP double-stranded methylated DNA binding
GO:0019904 IPI protein domain specific binding
GO:0044822 IDA poly(A) RNA binding
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0047485 IPI protein N-terminus binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000100750 Mecp2-001 protein_coding Mus_musculus 0 2874
ENSMUST00000170481 Mecp2-201 protein_coding Mus_musculus 0 2748
ENSMUST00000033770 Mecp2-002 protein_coding Mus_musculus 0 2097
ENSMUST00000123362 Mecp2-003 protein_coding Mus_musculus 0 1445
ENSMUST00000140399 Mecp2-004 protein_coding Mus_musculus 0 846

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