C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: poly(rC) binding protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000303577 PCBP1-001 ENSG00000169564 9606 + 2:70087454-70089203 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartLiverMuscleOvaryPlacentaTestisENST00000303577
Transcript ID Adipose Brain Breast Colon Heart Liver Muscle Ovary Placenta Testis
ENST00000303577 317.120±0.00 59.936±40.60 205.490±0.00 133.071±103.02 50.404±41.46 30.516±0.00 457.883±0.00 192.400±131.72 191.349±33.18 142.866±56.81

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089T CIL_00089T_0001 VISTA 2:69833131-70434482

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000398 TAS mRNA splicing, via spliceosome
GO:0003676 IEA nucleic acid binding
GO:0003697 IDA single-stranded DNA binding
GO:0003723 IDA:IEA RNA binding
GO:0005515 IPI protein binding
GO:0005654 TAS nucleoplasm
GO:0005737 IEA cytoplasm
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0030529 IEA ribonucleoprotein complex
GO:0044822 IDA poly(A) RNA binding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000053015 Pcbp1-001 protein_coding Mus_musculus 0 2536
ENSMUST00000077037 Pcbp2-201 protein_coding Mus_musculus 0 977
ENSMUST00000108838 Pcbp2-203 protein_coding Mus_musculus 0 593

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