C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: poly(rC) binding protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000077037 Pcbp2-201 ENSMUSG00000056851 10090 + 15:102470632-102500059 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000077037
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000077037 21.519±8.11 99.575±14.77 43.293±0.00 19.326±10.79 85.370±1.95 51.376±20.00 19.501±9.35 39.115±20.32 29.056±7.73 40.039±20.86 6.753±0.70 69.268±22.84 24.101±13.00 73.014±48.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B4 CIL_0009B4_0002 VISTA 15:102394217-102994945
CIL_00033G CIL_00033G_0003 CGP 15:102470632-102517064

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005925 IEA focal adhesion
GO:0016020 IEA membrane
GO:0019899 IEA enzyme binding
GO:0030529 IEA ribonucleoprotein complex
GO:0031625 IEA ubiquitin protein ligase binding
GO:0043161 ISS proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0044822 IEA poly(A) RNA binding
GO:0045087 IEA innate immune response
GO:0050687 ISS negative regulation of defense response to virus
GO:0051607 IEA defense response to virus
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000267079 MAP3K12-004 protein_coding Homo_sapiens 0 416
ENST00000303577 PCBP1-001 protein_coding Homo_sapiens 0 977
ENST00000359282 PCBP2-008 protein_coding Homo_sapiens 0 1297
ENST00000359462 PCBP2-007 protein_coding Homo_sapiens 0 2634
ENST00000437231 PCBP2-201 protein_coding Homo_sapiens 0 1297
ENST00000437262 PCBP2P1-001 processed_pseudogene Homo_sapiens 0 608
ENST00000439930 PCBP2-027 protein_coding Homo_sapiens 0 2036
ENST00000447282 PCBP2-202 protein_coding Homo_sapiens 0 1256
ENST00000455667 PCBP2-006 protein_coding Homo_sapiens 0 1040
ENST00000509726 PCBP2P3-001 processed_pseudogene Homo_sapiens 0 344
ENST00000517662 RP11-730G20.2-001 processed_pseudogene Homo_sapiens 0 861
ENST00000546463 PCBP2-028 protein_coding Homo_sapiens 0 2337
ENST00000546652 PCBP2-025 nonsense_mediated_decay Homo_sapiens 0 614
ENST00000547020 MAP3K12-006 retained_intron Homo_sapiens 0 377
ENST00000547048 PCBP2-010 retained_intron Homo_sapiens 0 926
ENST00000547859 PCBP2-013 protein_coding Homo_sapiens 0 976
ENST00000547987 PCBP2-020 retained_intron Homo_sapiens 0 313
ENST00000548190 PCBP2-014 retained_intron Homo_sapiens 0 364
ENST00000548933 PCBP2-011 protein_coding Homo_sapiens 0 968
ENST00000549272 PCBP2-021 retained_intron Homo_sapiens 0 213
ENST00000549863 PCBP2-002 protein_coding Homo_sapiens 0 1240
ENST00000550192 PCBP2-017 protein_coding Homo_sapiens 0 431
ENST00000550520 PCBP2-024 protein_coding Homo_sapiens 0 1018
ENST00000550585 PCBP2-009 nonsense_mediated_decay Homo_sapiens 0 1687
ENST00000550733 PCBP2-022 retained_intron Homo_sapiens 0 695
ENST00000550910 PCBP2-019 retained_intron Homo_sapiens 0 272
ENST00000551104 PCBP2-018 protein_coding Homo_sapiens 0 876
ENST00000552296 PCBP2-026 protein_coding Homo_sapiens 0 2169
ENST00000552819 PCBP2-003 protein_coding Homo_sapiens 0 985
ENST00000552980 PCBP2-016 protein_coding Homo_sapiens 0 283
ENST00000553064 PCBP2-023 protein_coding Homo_sapiens 0 673
ENST00000562264 PCBP2-012 protein_coding Homo_sapiens 0 933

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