C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: poly(rC) binding protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000053015 Pcbp1-001 ENSMUSG00000051695 10090 - 6:86524492-86526321 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000053015
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000053015 36.406±29.36 111.969±18.37 67.401±27.14 51.243±5.68 53.243±31.50 85.108±7.14 14.914±2.76 74.382±4.68 100.038±48.74 64.045±3.76 57.010±2.89 133.903±21.85 148.420±57.78 42.745±7.57

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089T CIL_00089T_0002 VISTA 6:86179085-86780169

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003697 IEA single-stranded DNA binding
GO:0003723 TAS RNA binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0006397 TAS mRNA processing
GO:0008494 TAS translation activator activity
GO:0016020 IEA membrane
GO:0030529 IEA ribonucleoprotein complex
GO:0044822 IEA poly(A) RNA binding
GO:0045727 TAS positive regulation of translation
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000303577 PCBP1-001 protein_coding Homo_sapiens 0 2536
ENST00000359282 PCBP2-008 protein_coding Homo_sapiens 0 544
ENST00000359462 PCBP2-007 protein_coding Homo_sapiens 0 955
ENST00000429752 RP5-1065J22.4-001 processed_pseudogene Homo_sapiens 0 586
ENST00000439930 PCBP2-027 protein_coding Homo_sapiens 0 837
ENST00000447282 PCBP2-202 protein_coding Homo_sapiens 0 544
ENST00000546463 PCBP2-028 protein_coding Homo_sapiens 0 833
ENST00000547048 PCBP2-010 retained_intron Homo_sapiens 0.00000005 64
ENST00000548933 PCBP2-011 protein_coding Homo_sapiens 0 440
ENST00000549863 PCBP2-002 protein_coding Homo_sapiens 0 536
ENST00000550585 PCBP2-009 nonsense_mediated_decay Homo_sapiens 0 675
ENST00000552296 PCBP2-026 protein_coding Homo_sapiens 0 782
ENST00000553064 PCBP2-023 protein_coding Homo_sapiens 0 350
ENST00000562264 PCBP2-012 protein_coding Homo_sapiens 0 457

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