C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: short chain dehydrogenase/reductase family 16C, member 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000303749 SDR16C5-001 ENSG00000170786 9606 - 8:56301208-56320682 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonLiverLungOvaryPlacentaTestisENST00000303749
Transcript ID Adipose Bladder Brain Breast Colon Liver Lung Ovary Placenta Testis
ENST00000303749 0.073±0.00 0.032±0.00 1.194±0.00 0.265±0.02 0.298±0.12 0.122±0.00 5.372±1.57 0.286±0.15 0.041±0.02 0.379±0.10

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005LV CIL_0005LV_0002 CGP 8:56300010-56446734

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004745 IDA retinol dehydrogenase activity
GO:0005789 IDA endoplasmic reticulum membrane
GO:0008152 IEA metabolic process
GO:0016021 IEA integral component of membrane
GO:0016491 IEA oxidoreductase activity
GO:0042572 IEA retinol metabolic process
GO:0042574 IDA retinal metabolic process
GO:0043616 IMP keratinocyte proliferation
GO:0050908 NAS detection of light stimulus involved in visual perception
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000040925 Sdr16c5-001 protein_coding Mus_musculus 0 872

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