C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: aprataxin and PNKP like factor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000303795 APLF-001 ENSG00000169621 9606 + 2:68467561-68580162 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000303795
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000303795 0.469±0.00 0.348±0.00 0.503±0.00 0.336±0.00 0.362±0.10 0.210±0.15 0.284±0.00 0.947±0.86 0.871±0.82 0.245±0.00 0.184±0.05 0.329±0.07 0.366±0.20

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008I2 CIL_0008I2_0001 VISTA 2:67892841-68494859
CIL_0002DS CIL_0002DS_0002 CGP 2:68467561-68655576

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000012 IMP single strand break repair
GO:0000166 IDA nucleotide binding
GO:0000737 IEA DNA catabolic process, endonucleolytic
GO:0003906 IDA DNA-(apurinic or apyrimidinic site) lyase activity
GO:0004520 IDA endodeoxyribonuclease activity
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0006302 IMP double-strand break repair
GO:0006974 IDA cellular response to DNA damage stimulus
GO:0008408 IDA 3'-5' exonuclease activity
GO:0035861 IDA site of double-strand break
GO:0045191 IEA regulation of isotype switching
GO:0046872 IEA metal ion binding
GO:0051106 IGI positive regulation of DNA ligation
GO:0090305 IDA nucleic acid phosphodiester bond hydrolysis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000032130 Aplf-201 protein_coding Mus_musculus 0 608
ENSMUST00000065997 Aplf-202 protein_coding Mus_musculus 0 532

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