C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: actin filament associated protein 1-like 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000304129 AFAP1L2-002 ENSG00000169129 9606 - 10:114294824-114404485 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENST00000304129
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENST00000304129 2.250±0.00 2.559±0.00 1.138±0.00 1.569±0.68 2.304±0.00 4.347±0.00 1.200±0.00 4.025±3.91 0.559±0.00 0.818±0.00 3.767±2.46 7.137±1.38 2.590±2.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002OI CIL_0002OI_0001 CGP 10:114239330-114404756
CIL_0002OJ CIL_0002OJ_0001 CGP 10:114294824-114685003

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005737 IDA cytoplasm
GO:0006954 IDA inflammatory response
GO:0007346 IDA regulation of mitotic cell cycle
GO:0017124 IPI SH3 domain binding
GO:0030296 IDA protein tyrosine kinase activator activity
GO:0032675 IDA regulation of interleukin-6 production
GO:0032757 IDA positive regulation of interleukin-8 production
GO:0042169 IPI SH2 domain binding
GO:0045742 IDA positive regulation of epidermal growth factor receptor signaling pathway
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0061098 IDA positive regulation of protein tyrosine kinase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000118800 Afap1l2-005 protein_coding Mus_musculus 0 2444
ENSMUST00000122359 Afap1l2-001 protein_coding Mus_musculus 0 2407
ENSMUST00000111584 Afap1l2-003 protein_coding Mus_musculus 0 2403
ENSMUST00000148049 Afap1l2-002 protein_coding Mus_musculus 0 1053
ENSMUST00000155467 Afap1l2-007 retained_intron Mus_musculus 0 767
ENSMUST00000126964 Afap1l2-006 protein_coding Mus_musculus 0 606
ENSMUST00000132851 Afap1l2-004 retained_intron Mus_musculus 0 344

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